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Zinc in PDB 2f5s: Catalytically Inactive (E3Q) Mutm Crosslinked to Oxog:C Containing Dna CC1

Enzymatic activity of Catalytically Inactive (E3Q) Mutm Crosslinked to Oxog:C Containing Dna CC1

All present enzymatic activity of Catalytically Inactive (E3Q) Mutm Crosslinked to Oxog:C Containing Dna CC1:
3.2.2.23;

Protein crystallography data

The structure of Catalytically Inactive (E3Q) Mutm Crosslinked to Oxog:C Containing Dna CC1, PDB code: 2f5s was solved by A.Banerjee, W.L.Santos, G.L.Verdine, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.99 / 2.35
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 45.395, 93.366, 103.705, 90.00, 90.00, 90.00
R / Rfree (%) 22 / 26.1

Zinc Binding Sites:

The binding sites of Zinc atom in the Catalytically Inactive (E3Q) Mutm Crosslinked to Oxog:C Containing Dna CC1 (pdb code 2f5s). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Catalytically Inactive (E3Q) Mutm Crosslinked to Oxog:C Containing Dna CC1, PDB code: 2f5s:

Zinc binding site 1 out of 1 in 2f5s

Go back to Zinc Binding Sites List in 2f5s
Zinc binding site 1 out of 1 in the Catalytically Inactive (E3Q) Mutm Crosslinked to Oxog:C Containing Dna CC1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Catalytically Inactive (E3Q) Mutm Crosslinked to Oxog:C Containing Dna CC1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn300

b:33.6
occ:1.00
SG A:CYS249 2.4 27.7 1.0
SG A:CYS269 2.5 35.8 1.0
SG A:CYS252 2.5 37.3 1.0
SG A:CYS272 2.7 38.4 1.0
CB A:CYS249 3.2 34.6 1.0
CB A:CYS252 3.3 34.6 1.0
CB A:CYS269 3.4 34.0 1.0
CB A:CYS272 3.6 38.3 1.0
N A:CYS252 3.7 36.0 1.0
CA A:CYS252 4.1 36.0 1.0
CE1 A:PHE182 4.2 27.4 1.0
N A:CYS272 4.3 36.5 1.0
CB A:ARG251 4.6 39.2 1.0
CA A:CYS272 4.6 36.9 1.0
CA A:CYS249 4.7 37.8 1.0
CZ A:PHE182 4.7 29.4 1.0
C A:ARG251 4.7 38.1 1.0
C A:CYS252 4.7 34.0 1.0
CB A:ARG271 4.8 35.5 1.0
N A:GLY253 4.8 34.7 1.0
CB A:THR254 4.8 32.8 1.0
CA A:CYS269 4.9 34.4 1.0
OG1 A:THR254 4.9 35.4 1.0
N A:THR254 4.9 33.0 1.0
N A:ARG251 5.0 40.9 1.0
O A:THR254 5.0 36.1 1.0

Reference:

A.Banerjee, W.L.Santos, G.L.Verdine. Structure of A Dna Glycosylase Searching For Lesions. Science V. 311 1153 2006.
ISSN: ISSN 0036-8075
PubMed: 16497933
DOI: 10.1126/SCIENCE.1120288
Page generated: Wed Dec 16 03:27:48 2020

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