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Zinc in PDB 2f4y: Barnase Cross-Linked with Glutaraldehyde

Protein crystallography data

The structure of Barnase Cross-Linked with Glutaraldehyde, PDB code: 2f4y was solved by T.Prange, M.Salem, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 9.00 / 2.15
Space group P 32
Cell size a, b, c (Å), α, β, γ (°) 58.970, 58.970, 82.140, 90.00, 90.00, 120.00
R / Rfree (%) n/a / n/a

Zinc Binding Sites:

The binding sites of Zinc atom in the Barnase Cross-Linked with Glutaraldehyde (pdb code 2f4y). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Barnase Cross-Linked with Glutaraldehyde, PDB code: 2f4y:

Zinc binding site 1 out of 1 in 2f4y

Go back to Zinc Binding Sites List in 2f4y
Zinc binding site 1 out of 1 in the Barnase Cross-Linked with Glutaraldehyde


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Barnase Cross-Linked with Glutaraldehyde within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn1001

b:25.4
occ:1.00
OE2 C:GLU58 2.0 22.6 1.0
O C:HOH1057 2.1 25.2 1.0
OE1 C:GLU58 2.3 29.4 1.0
NZ C:LYS60 2.4 24.0 1.0
CD C:GLU58 2.4 24.6 1.0
CE C:LYS60 3.2 16.6 1.0
CG C:GLU58 3.9 20.1 1.0
O C:HOH1040 4.4 38.7 1.0
O C:TYR101 4.5 12.2 1.0
CB C:GLU58 4.6 22.4 1.0
CD C:LYS60 4.6 16.9 1.0
CA C:GLN102 4.9 12.1 1.0
CG C:GLN102 4.9 14.7 1.0
O C:HOH1019 4.9 32.3 1.0

Reference:

M.Salem, Y.Mauguen, T.Prange. On the Edge of the Denaturation Process: Application of X-Ray Diffraction to Barnase and Lysozyme Cross-Linked Crystals with Denaturants in Molar Concentrations. Biochim.Biophys.Acta V.1764 903 2006.
ISSN: ISSN 0006-3002
PubMed: 16600702
DOI: 10.1016/J.BBAPAP.2006.02.009
Page generated: Wed Dec 16 03:27:47 2020

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