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Zinc in PDB 2f4m: The Mouse Pngase-HR23 Complex Reveals A Complete Remodulation of the Protein-Protein Interface Compared to Its Yeast Orthologs

Enzymatic activity of The Mouse Pngase-HR23 Complex Reveals A Complete Remodulation of the Protein-Protein Interface Compared to Its Yeast Orthologs

All present enzymatic activity of The Mouse Pngase-HR23 Complex Reveals A Complete Remodulation of the Protein-Protein Interface Compared to Its Yeast Orthologs:
3.5.1.52;

Protein crystallography data

The structure of The Mouse Pngase-HR23 Complex Reveals A Complete Remodulation of the Protein-Protein Interface Compared to Its Yeast Orthologs, PDB code: 2f4m was solved by G.Zhao, X.Zhou, L.Wang, C.Kisker, W.J.Lennarz, H.Schindelin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.85
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 98.225, 52.297, 82.548, 90.00, 115.33, 90.00
R / Rfree (%) 18.6 / 23.9

Other elements in 2f4m:

The structure of The Mouse Pngase-HR23 Complex Reveals A Complete Remodulation of the Protein-Protein Interface Compared to Its Yeast Orthologs also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the The Mouse Pngase-HR23 Complex Reveals A Complete Remodulation of the Protein-Protein Interface Compared to Its Yeast Orthologs (pdb code 2f4m). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the The Mouse Pngase-HR23 Complex Reveals A Complete Remodulation of the Protein-Protein Interface Compared to Its Yeast Orthologs, PDB code: 2f4m:

Zinc binding site 1 out of 1 in 2f4m

Go back to Zinc Binding Sites List in 2f4m
Zinc binding site 1 out of 1 in the The Mouse Pngase-HR23 Complex Reveals A Complete Remodulation of the Protein-Protein Interface Compared to Its Yeast Orthologs


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Mouse Pngase-HR23 Complex Reveals A Complete Remodulation of the Protein-Protein Interface Compared to Its Yeast Orthologs within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn501

b:47.2
occ:1.00
 SG A:CYS280 2.3 44.0 1.0
SG A:CYS250 2.3 44.1 1.0
SG A:CYS247 2.4 45.4 1.0
SG A:CYS283 2.4 42.7 1.0
CB A:CYS283 3.2 43.3 1.0
CB A:CYS247 3.2 46.2 1.0
CB A:CYS250 3.3 45.3 1.0
CB A:CYS280 3.3 43.0 1.0
N A:CYS250 3.7 45.3 1.0
N A:CYS283 4.0 41.7 1.0
CA A:CYS250 4.1 45.4 1.0
CA A:CYS283 4.2 42.3 1.0
CA A:CYS247 4.7 45.9 1.0
CB A:LYS249 4.7 46.3 1.0
CA A:CYS280 4.7 43.4 1.0
C A:CYS250 4.8 45.5 1.0
C A:LYS249 4.8 46.0 1.0
CB A:ALA282 4.8 42.2 1.0
N A:GLY251 5.0 45.6 1.0
C A:ALA282 5.0 42.0 1.0
N A:GLY252 5.0 46.5 1.0

Reference:

G.Zhao, X.Zhou, L.Wang, G.Li, C.Kisker, W.J.Lennarz, H.Schindelin. Structure of the Mouse Peptide N-Glycanase-HR23 Complex Suggests Co-Evolution of the Endoplasmic Reticulum-Associated Degradation and Dna Repair Pathways. J.Biol.Chem. V. 281 13751 2006.
ISSN: ISSN 0021-9258
PubMed: 16500903
DOI: 10.1074/JBC.M600137200
Page generated: Wed Oct 16 23:37:56 2024

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