Atomistry » Zinc » PDB 2exf-2fa7 » 2f4l
Atomistry »
  Zinc »
    PDB 2exf-2fa7 »
      2f4l »

Zinc in PDB 2f4l: Crystal Structure of A Putative Acetamidase (TM0119) From Thermotoga Maritima MSB8 at 2.50 A Resolution

Protein crystallography data

The structure of Crystal Structure of A Putative Acetamidase (TM0119) From Thermotoga Maritima MSB8 at 2.50 A Resolution, PDB code: 2f4l was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.70 / 2.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 80.257, 104.068, 154.945, 90.00, 90.00, 90.00
R / Rfree (%) 19.2 / 24.2

Other elements in 2f4l:

The structure of Crystal Structure of A Putative Acetamidase (TM0119) From Thermotoga Maritima MSB8 at 2.50 A Resolution also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of A Putative Acetamidase (TM0119) From Thermotoga Maritima MSB8 at 2.50 A Resolution (pdb code 2f4l). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 8 binding sites of Zinc where determined in the Crystal Structure of A Putative Acetamidase (TM0119) From Thermotoga Maritima MSB8 at 2.50 A Resolution, PDB code: 2f4l:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Zinc binding site 1 out of 8 in 2f4l

Go back to Zinc Binding Sites List in 2f4l
Zinc binding site 1 out of 8 in the Crystal Structure of A Putative Acetamidase (TM0119) From Thermotoga Maritima MSB8 at 2.50 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Putative Acetamidase (TM0119) From Thermotoga Maritima MSB8 at 2.50 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1400

b:37.0
occ:1.00
 NE2 A:HIS175 2.1 29.0 1.0
OE1 A:GLU189 2.1 27.7 1.0
OD1 A:ASP173 2.2 25.9 1.0
OE2 A:GLU189 2.2 19.2 1.0
CD A:GLU189 2.4 27.7 1.0
CE1 A:HIS175 3.0 34.5 1.0
O A:HOH1450 3.0 30.1 1.0
CG A:ASP173 3.0 19.5 1.0
CD2 A:HIS175 3.1 26.4 1.0
OD2 A:ASP173 3.2 26.3 1.0
ZN A:ZN1401 3.3 48.7 1.0
CG A:GLU189 3.9 32.9 1.0
CB A:ALA36 3.9 28.4 1.0
ND1 A:HIS175 4.1 26.9 1.0
OE2 A:GLU182 4.1 55.4 1.0
CG A:HIS175 4.2 26.1 1.0
OD1 A:ASP148 4.3 34.6 1.0
O A:HOH1405 4.4 18.5 1.0
CB A:ASP173 4.4 23.5 1.0
O A:ASP173 4.6 22.7 1.0
N A:ALA187 4.8 26.0 1.0
CB A:GLU189 4.9 31.1 1.0
CA A:ASP173 4.9 22.7 1.0
C A:ASP173 5.0 21.8 1.0

Zinc binding site 2 out of 8 in 2f4l

Go back to Zinc Binding Sites List in 2f4l
Zinc binding site 2 out of 8 in the Crystal Structure of A Putative Acetamidase (TM0119) From Thermotoga Maritima MSB8 at 2.50 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of A Putative Acetamidase (TM0119) From Thermotoga Maritima MSB8 at 2.50 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1401

b:48.7
occ:1.00
 OD1 A:ASN146 2.1 29.8 1.0
OD1 A:ASP148 2.2 34.6 1.0
OD2 A:ASP173 2.3 26.3 1.0
OD2 A:ASP148 2.7 37.7 1.0
CG A:ASP148 2.8 33.4 1.0
CG A:ASN146 3.0 28.0 1.0
O A:HOH1450 3.0 30.1 1.0
ND2 A:ASN146 3.2 31.1 1.0
CG A:ASP173 3.2 19.5 1.0
ZN A:ZN1400 3.3 37.0 1.0
OD1 A:ASP173 3.6 25.9 1.0
OE2 A:GLU182 4.0 55.4 1.0
CE1 A:HIS175 4.1 34.5 1.0
NE2 A:HIS175 4.2 29.0 1.0
CB A:ASP148 4.3 29.4 1.0
OE1 A:GLU182 4.4 47.5 1.0
CB A:ASN146 4.4 27.6 1.0
CB A:ASP173 4.5 23.5 1.0
CD A:GLU182 4.6 35.9 1.0
ND2 A:ASN50 4.6 37.2 1.0
O A:GLY124 4.8 26.2 1.0
ND2 A:ASN268 4.8 29.4 1.0
OD1 A:ASN268 4.9 28.2 1.0
CG2 A:VAL125 4.9 22.0 1.0
CA A:ASN146 4.9 28.0 1.0
C A:GLY124 4.9 25.4 1.0
CA A:ASP148 5.0 29.5 1.0
N A:ASP148 5.0 29.3 1.0

Zinc binding site 3 out of 8 in 2f4l

Go back to Zinc Binding Sites List in 2f4l
Zinc binding site 3 out of 8 in the Crystal Structure of A Putative Acetamidase (TM0119) From Thermotoga Maritima MSB8 at 2.50 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of A Putative Acetamidase (TM0119) From Thermotoga Maritima MSB8 at 2.50 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn2400

b:38.3
occ:1.00
 OD1 B:ASP173 2.1 22.7 1.0
OE1 B:GLU189 2.2 25.0 1.0
NE2 B:HIS175 2.2 27.5 1.0
OE2 B:GLU189 2.5 27.1 1.0
O B:HOH2435 2.6 21.3 1.0
CD B:GLU189 2.7 27.4 1.0
CG B:ASP173 3.0 20.0 1.0
CD2 B:HIS175 3.1 26.8 1.0
OD2 B:ASP173 3.2 26.1 1.0
CE1 B:HIS175 3.3 34.4 1.0
ZN B:ZN2401 3.3 48.1 1.0
CB B:ALA36 4.0 29.6 1.0
OE2 B:GLU182 4.1 55.8 1.0
CG B:GLU189 4.2 29.5 1.0
CG B:HIS175 4.3 26.8 1.0
O B:HOH2413 4.3 20.4 1.0
ND1 B:HIS175 4.3 27.0 1.0
CB B:ASP173 4.4 23.4 1.0
O B:ASP173 4.4 22.6 1.0
OD1 B:ASP148 4.5 36.7 1.0
N B:ALA187 4.6 30.0 1.0
C B:ASP173 4.8 22.6 1.0
CA B:ASP173 4.8 22.7 1.0
CB B:ALA187 4.9 29.3 1.0
CB B:GLU189 5.0 27.7 1.0

Zinc binding site 4 out of 8 in 2f4l

Go back to Zinc Binding Sites List in 2f4l
Zinc binding site 4 out of 8 in the Crystal Structure of A Putative Acetamidase (TM0119) From Thermotoga Maritima MSB8 at 2.50 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of A Putative Acetamidase (TM0119) From Thermotoga Maritima MSB8 at 2.50 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn2401

b:48.1
occ:1.00
 OD1 B:ASP148 2.2 36.7 1.0
OD2 B:ASP173 2.2 26.1 1.0
OD1 B:ASN146 2.2 29.4 1.0
OD2 B:ASP148 2.5 37.2 1.0
CG B:ASP148 2.7 33.5 1.0
CG B:ASN146 3.1 27.9 1.0
CG B:ASP173 3.2 20.0 1.0
ND2 B:ASN146 3.3 29.9 1.0
ZN B:ZN2400 3.3 38.3 1.0
O B:HOH2435 3.5 21.3 1.0
OD1 B:ASP173 3.6 22.7 1.0
OE2 B:GLU182 4.0 55.8 1.0
OE1 B:GLU182 4.1 41.3 1.0
NE2 B:HIS175 4.1 27.5 1.0
CB B:ASP148 4.2 29.0 1.0
CE1 B:HIS175 4.2 34.4 1.0
CD B:GLU182 4.5 36.8 1.0
CB B:ASP173 4.5 23.4 1.0
CB B:ASN146 4.5 27.0 1.0
ND2 B:ASN268 4.6 29.5 1.0
ND2 B:ASN50 4.8 37.9 1.0
OD1 B:ASN268 4.8 29.0 1.0
CG2 B:VAL125 4.8 21.8 1.0
O B:GLY124 4.8 25.0 1.0
C B:GLY124 4.8 25.0 1.0
CA B:GLY124 4.8 25.7 1.0
CA B:ASP148 4.9 29.5 1.0
CA B:ASN146 5.0 27.2 1.0

Zinc binding site 5 out of 8 in 2f4l

Go back to Zinc Binding Sites List in 2f4l
Zinc binding site 5 out of 8 in the Crystal Structure of A Putative Acetamidase (TM0119) From Thermotoga Maritima MSB8 at 2.50 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Crystal Structure of A Putative Acetamidase (TM0119) From Thermotoga Maritima MSB8 at 2.50 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn3400

b:49.4
occ:1.00
 OD1 C:ASP148 2.0 35.8 1.0
OD2 C:ASP173 2.1 27.7 1.0
OD1 C:ASN146 2.2 30.6 1.0
OD2 C:ASP148 2.5 35.4 1.0
CG C:ASP148 2.6 33.9 1.0
CG C:ASN146 3.2 27.5 1.0
CG C:ASP173 3.2 20.6 1.0
ZN C:ZN3401 3.4 40.9 1.0
ND2 C:ASN146 3.5 30.7 1.0
O C:HOH3444 3.6 21.2 1.0
OD1 C:ASP173 3.7 24.9 1.0
OE2 C:GLU182 3.9 45.9 1.0
OE1 C:GLU182 4.1 44.1 1.0
CB C:ASP148 4.1 30.2 1.0
CE1 C:HIS175 4.3 33.7 1.0
NE2 C:HIS175 4.3 29.1 1.0
CD C:GLU182 4.4 33.3 1.0
CB C:ASP173 4.5 23.1 1.0
ND2 C:ASN268 4.5 28.0 1.0
CB C:ASN146 4.6 27.6 1.0
ND2 C:ASN50 4.6 35.5 1.0
CA C:GLY124 4.7 25.1 1.0
C C:GLY124 4.7 25.7 1.0
O C:GLY124 4.7 25.8 1.0
CA C:ASP148 4.8 29.7 1.0
CG2 C:VAL125 4.8 22.3 1.0
OD1 C:ASN268 4.9 28.9 1.0
N C:ASP148 4.9 28.5 1.0
CA C:ASN146 4.9 27.3 1.0

Zinc binding site 6 out of 8 in 2f4l

Go back to Zinc Binding Sites List in 2f4l
Zinc binding site 6 out of 8 in the Crystal Structure of A Putative Acetamidase (TM0119) From Thermotoga Maritima MSB8 at 2.50 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Crystal Structure of A Putative Acetamidase (TM0119) From Thermotoga Maritima MSB8 at 2.50 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn3401

b:40.9
occ:1.00
 OD1 C:ASP173 2.1 24.9 1.0
OE1 C:GLU189 2.3 34.6 1.0
NE2 C:HIS175 2.3 29.1 1.0
OE2 C:GLU189 2.4 39.0 1.0
CD C:GLU189 2.6 32.1 1.0
O C:HOH3444 2.6 21.2 1.0
CG C:ASP173 3.0 20.6 1.0
CE1 C:HIS175 3.2 33.7 1.0
OD2 C:ASP173 3.2 27.7 1.0
CD2 C:HIS175 3.2 27.4 1.0
ZN C:ZN3400 3.4 49.4 1.0
OE2 C:GLU182 3.8 45.9 1.0
CB C:ALA36 4.0 33.0 1.0
CG C:GLU189 4.1 28.5 1.0
OD1 C:ASP148 4.2 35.8 1.0
ND1 C:HIS175 4.3 26.1 1.0
CG C:HIS175 4.4 26.3 1.0
CB C:ASP173 4.4 23.1 1.0
O C:ASP173 4.6 21.4 1.0
N C:ALA187 4.6 29.2 1.0
CA C:ASP173 4.9 21.8 1.0
C C:ASP173 4.9 22.1 1.0
CD C:GLU182 4.9 33.3 1.0
CB C:GLU189 5.0 28.4 1.0

Zinc binding site 7 out of 8 in 2f4l

Go back to Zinc Binding Sites List in 2f4l
Zinc binding site 7 out of 8 in the Crystal Structure of A Putative Acetamidase (TM0119) From Thermotoga Maritima MSB8 at 2.50 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Crystal Structure of A Putative Acetamidase (TM0119) From Thermotoga Maritima MSB8 at 2.50 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn4400

b:49.4
occ:1.00
 OD2 D:ASP173 2.2 28.7 1.0
OD1 D:ASP148 2.3 36.3 1.0
OD1 D:ASN146 2.3 29.6 1.0
OD2 D:ASP148 2.6 36.2 1.0
CG D:ASP148 2.8 33.4 1.0
O D:HOH4439 3.1 31.9 1.0
CG D:ASN146 3.1 27.9 1.0
CG D:ASP173 3.1 21.4 1.0
ND2 D:ASN146 3.2 30.7 1.0
ZN D:ZN4401 3.3 42.3 1.0
OD1 D:ASP173 3.5 22.7 1.0
OE2 D:GLU182 3.9 48.5 1.0
CE1 D:HIS175 4.1 33.5 1.0
OE1 D:GLU182 4.1 38.7 1.0
NE2 D:HIS175 4.2 29.1 1.0
CB D:ASP148 4.3 29.8 1.0
CD D:GLU182 4.4 35.4 1.0
CB D:ASP173 4.5 23.1 1.0
ND2 D:ASN50 4.5 38.2 1.0
CB D:ASN146 4.5 27.5 1.0
ND2 D:ASN268 4.6 27.9 1.0
O D:GLY124 4.8 24.4 1.0
CG2 D:VAL125 4.9 22.3 1.0
OD1 D:ASN268 4.9 29.0 1.0
C D:GLY124 5.0 25.5 1.0

Zinc binding site 8 out of 8 in 2f4l

Go back to Zinc Binding Sites List in 2f4l
Zinc binding site 8 out of 8 in the Crystal Structure of A Putative Acetamidase (TM0119) From Thermotoga Maritima MSB8 at 2.50 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Crystal Structure of A Putative Acetamidase (TM0119) From Thermotoga Maritima MSB8 at 2.50 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn4401

b:42.3
occ:1.00
 OE1 D:GLU189 2.0 33.6 1.0
OD1 D:ASP173 2.1 22.7 1.0
NE2 D:HIS175 2.1 29.1 1.0
OE2 D:GLU189 2.4 29.0 1.0
CD D:GLU189 2.5 27.9 1.0
CE1 D:HIS175 3.0 33.5 1.0
CG D:ASP173 3.1 21.4 1.0
CD2 D:HIS175 3.2 25.0 1.0
O D:HOH4439 3.3 31.9 1.0
OD2 D:ASP173 3.3 28.7 1.0
ZN D:ZN4400 3.3 49.4 1.0
OE2 D:GLU182 3.7 48.5 1.0
CG D:GLU189 4.0 28.2 1.0
CB D:ALA36 4.0 29.7 1.0
ND1 D:HIS175 4.2 26.4 1.0
CG D:HIS175 4.3 26.1 1.0
OD1 D:ASP148 4.4 36.3 1.0
O D:ASP173 4.4 22.0 1.0
CB D:ASP173 4.5 23.1 1.0
N D:ALA187 4.6 31.0 1.0
C D:ASP173 4.8 22.4 1.0
CA D:ASP173 4.9 22.8 1.0
CB D:GLU189 4.9 24.7 1.0
CD D:GLU182 4.9 35.4 1.0
CB D:ALA187 5.0 30.2 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Wed Oct 16 23:37:14 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy