Atomistry » Zinc » PDB 2ewb-2f9v » 2f4l
Atomistry »
  Zinc »
    PDB 2ewb-2f9v »
      2f4l »

Zinc in PDB 2f4l: Crystal Structure of A Putative Acetamidase (TM0119) From Thermotoga Maritima MSB8 at 2.50 A Resolution

Protein crystallography data

The structure of Crystal Structure of A Putative Acetamidase (TM0119) From Thermotoga Maritima MSB8 at 2.50 A Resolution, PDB code: 2f4l was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.70 / 2.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 80.257, 104.068, 154.945, 90.00, 90.00, 90.00
R / Rfree (%) 19.2 / 24.2

Other elements in 2f4l:

The structure of Crystal Structure of A Putative Acetamidase (TM0119) From Thermotoga Maritima MSB8 at 2.50 A Resolution also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of A Putative Acetamidase (TM0119) From Thermotoga Maritima MSB8 at 2.50 A Resolution (pdb code 2f4l). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 8 binding sites of Zinc where determined in the Crystal Structure of A Putative Acetamidase (TM0119) From Thermotoga Maritima MSB8 at 2.50 A Resolution, PDB code: 2f4l:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Zinc binding site 1 out of 8 in 2f4l

Go back to Zinc Binding Sites List in 2f4l
Zinc binding site 1 out of 8 in the Crystal Structure of A Putative Acetamidase (TM0119) From Thermotoga Maritima MSB8 at 2.50 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Putative Acetamidase (TM0119) From Thermotoga Maritima MSB8 at 2.50 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1400

b:37.0
occ:1.00
 NE2 A:HIS175 2.1 29.0 1.0
OE1 A:GLU189 2.1 27.7 1.0
OD1 A:ASP173 2.2 25.9 1.0
OE2 A:GLU189 2.2 19.2 1.0
CD A:GLU189 2.4 27.7 1.0
CE1 A:HIS175 3.0 34.5 1.0
O A:HOH1450 3.0 30.1 1.0
CG A:ASP173 3.0 19.5 1.0
CD2 A:HIS175 3.1 26.4 1.0
OD2 A:ASP173 3.2 26.3 1.0
ZN A:ZN1401 3.3 48.7 1.0
CG A:GLU189 3.9 32.9 1.0
CB A:ALA36 3.9 28.4 1.0
ND1 A:HIS175 4.1 26.9 1.0
OE2 A:GLU182 4.1 55.4 1.0
CG A:HIS175 4.2 26.1 1.0
OD1 A:ASP148 4.3 34.6 1.0
O A:HOH1405 4.4 18.5 1.0
CB A:ASP173 4.4 23.5 1.0
O A:ASP173 4.6 22.7 1.0
N A:ALA187 4.8 26.0 1.0
CB A:GLU189 4.9 31.1 1.0
CA A:ASP173 4.9 22.7 1.0
C A:ASP173 5.0 21.8 1.0

Zinc binding site 2 out of 8 in 2f4l

Go back to Zinc Binding Sites List in 2f4l
Zinc binding site 2 out of 8 in the Crystal Structure of A Putative Acetamidase (TM0119) From Thermotoga Maritima MSB8 at 2.50 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of A Putative Acetamidase (TM0119) From Thermotoga Maritima MSB8 at 2.50 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1401

b:48.7
occ:1.00
 OD1 A:ASN146 2.1 29.8 1.0
OD1 A:ASP148 2.2 34.6 1.0
OD2 A:ASP173 2.3 26.3 1.0
OD2 A:ASP148 2.7 37.7 1.0
CG A:ASP148 2.8 33.4 1.0
CG A:ASN146 3.0 28.0 1.0
O A:HOH1450 3.0 30.1 1.0
ND2 A:ASN146 3.2 31.1 1.0
CG A:ASP173 3.2 19.5 1.0
ZN A:ZN1400 3.3 37.0 1.0
OD1 A:ASP173 3.6 25.9 1.0
OE2 A:GLU182 4.0 55.4 1.0
CE1 A:HIS175 4.1 34.5 1.0
NE2 A:HIS175 4.2 29.0 1.0
CB A:ASP148 4.3 29.4 1.0
OE1 A:GLU182 4.4 47.5 1.0
CB A:ASN146 4.4 27.6 1.0
CB A:ASP173 4.5 23.5 1.0
CD A:GLU182 4.6 35.9 1.0
ND2 A:ASN50 4.6 37.2 1.0
O A:GLY124 4.8 26.2 1.0
ND2 A:ASN268 4.8 29.4 1.0
OD1 A:ASN268 4.9 28.2 1.0
CG2 A:VAL125 4.9 22.0 1.0
CA A:ASN146 4.9 28.0 1.0
C A:GLY124 4.9 25.4 1.0
CA A:ASP148 5.0 29.5 1.0
N A:ASP148 5.0 29.3 1.0

Zinc binding site 3 out of 8 in 2f4l

Go back to Zinc Binding Sites List in 2f4l
Zinc binding site 3 out of 8 in the Crystal Structure of A Putative Acetamidase (TM0119) From Thermotoga Maritima MSB8 at 2.50 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of A Putative Acetamidase (TM0119) From Thermotoga Maritima MSB8 at 2.50 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn2400

b:38.3
occ:1.00
 OD1 B:ASP173 2.1 22.7 1.0
OE1 B:GLU189 2.2 25.0 1.0
NE2 B:HIS175 2.2 27.5 1.0
OE2 B:GLU189 2.5 27.1 1.0
O B:HOH2435 2.6 21.3 1.0
CD B:GLU189 2.7 27.4 1.0
CG B:ASP173 3.0 20.0 1.0
CD2 B:HIS175 3.1 26.8 1.0
OD2 B:ASP173 3.2 26.1 1.0
CE1 B:HIS175 3.3 34.4 1.0
ZN B:ZN2401 3.3 48.1 1.0
CB B:ALA36 4.0 29.6 1.0
OE2 B:GLU182 4.1 55.8 1.0
CG B:GLU189 4.2 29.5 1.0
CG B:HIS175 4.3 26.8 1.0
O B:HOH2413 4.3 20.4 1.0
ND1 B:HIS175 4.3 27.0 1.0
CB B:ASP173 4.4 23.4 1.0
O B:ASP173 4.4 22.6 1.0
OD1 B:ASP148 4.5 36.7 1.0
N B:ALA187 4.6 30.0 1.0
C B:ASP173 4.8 22.6 1.0
CA B:ASP173 4.8 22.7 1.0
CB B:ALA187 4.9 29.3 1.0
CB B:GLU189 5.0 27.7 1.0

Zinc binding site 4 out of 8 in 2f4l

Go back to Zinc Binding Sites List in 2f4l
Zinc binding site 4 out of 8 in the Crystal Structure of A Putative Acetamidase (TM0119) From Thermotoga Maritima MSB8 at 2.50 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of A Putative Acetamidase (TM0119) From Thermotoga Maritima MSB8 at 2.50 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn2401

b:48.1
occ:1.00
 OD1 B:ASP148 2.2 36.7 1.0
OD2 B:ASP173 2.2 26.1 1.0
OD1 B:ASN146 2.2 29.4 1.0
OD2 B:ASP148 2.5 37.2 1.0
CG B:ASP148 2.7 33.5 1.0
CG B:ASN146 3.1 27.9 1.0
CG B:ASP173 3.2 20.0 1.0
ND2 B:ASN146 3.3 29.9 1.0
ZN B:ZN2400 3.3 38.3 1.0
O B:HOH2435 3.5 21.3 1.0
OD1 B:ASP173 3.6 22.7 1.0
OE2 B:GLU182 4.0 55.8 1.0
OE1 B:GLU182 4.1 41.3 1.0
NE2 B:HIS175 4.1 27.5 1.0
CB B:ASP148 4.2 29.0 1.0
CE1 B:HIS175 4.2 34.4 1.0
CD B:GLU182 4.5 36.8 1.0
CB B:ASP173 4.5 23.4 1.0
CB B:ASN146 4.5 27.0 1.0
ND2 B:ASN268 4.6 29.5 1.0
ND2 B:ASN50 4.8 37.9 1.0
OD1 B:ASN268 4.8 29.0 1.0
CG2 B:VAL125 4.8 21.8 1.0
O B:GLY124 4.8 25.0 1.0
C B:GLY124 4.8 25.0 1.0
CA B:GLY124 4.8 25.7 1.0
CA B:ASP148 4.9 29.5 1.0
CA B:ASN146 5.0 27.2 1.0

Zinc binding site 5 out of 8 in 2f4l

Go back to Zinc Binding Sites List in 2f4l
Zinc binding site 5 out of 8 in the Crystal Structure of A Putative Acetamidase (TM0119) From Thermotoga Maritima MSB8 at 2.50 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Crystal Structure of A Putative Acetamidase (TM0119) From Thermotoga Maritima MSB8 at 2.50 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn3400

b:49.4
occ:1.00
 OD1 C:ASP148 2.0 35.8 1.0
OD2 C:ASP173 2.1 27.7 1.0
OD1 C:ASN146 2.2 30.6 1.0
OD2 C:ASP148 2.5 35.4 1.0
CG C:ASP148 2.6 33.9 1.0
CG C:ASN146 3.2 27.5 1.0
CG C:ASP173 3.2 20.6 1.0
ZN C:ZN3401 3.4 40.9 1.0
ND2 C:ASN146 3.5 30.7 1.0
O C:HOH3444 3.6 21.2 1.0
OD1 C:ASP173 3.7 24.9 1.0
OE2 C:GLU182 3.9 45.9 1.0
OE1 C:GLU182 4.1 44.1 1.0
CB C:ASP148 4.1 30.2 1.0
CE1 C:HIS175 4.3 33.7 1.0
NE2 C:HIS175 4.3 29.1 1.0
CD C:GLU182 4.4 33.3 1.0
CB C:ASP173 4.5 23.1 1.0
ND2 C:ASN268 4.5 28.0 1.0
CB C:ASN146 4.6 27.6 1.0
ND2 C:ASN50 4.6 35.5 1.0
CA C:GLY124 4.7 25.1 1.0
C C:GLY124 4.7 25.7 1.0
O C:GLY124 4.7 25.8 1.0
CA C:ASP148 4.8 29.7 1.0
CG2 C:VAL125 4.8 22.3 1.0
OD1 C:ASN268 4.9 28.9 1.0
N C:ASP148 4.9 28.5 1.0
CA C:ASN146 4.9 27.3 1.0

Zinc binding site 6 out of 8 in 2f4l

Go back to Zinc Binding Sites List in 2f4l
Zinc binding site 6 out of 8 in the Crystal Structure of A Putative Acetamidase (TM0119) From Thermotoga Maritima MSB8 at 2.50 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Crystal Structure of A Putative Acetamidase (TM0119) From Thermotoga Maritima MSB8 at 2.50 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn3401

b:40.9
occ:1.00
 OD1 C:ASP173 2.1 24.9 1.0
OE1 C:GLU189 2.3 34.6 1.0
NE2 C:HIS175 2.3 29.1 1.0
OE2 C:GLU189 2.4 39.0 1.0
CD C:GLU189 2.6 32.1 1.0
O C:HOH3444 2.6 21.2 1.0
CG C:ASP173 3.0 20.6 1.0
CE1 C:HIS175 3.2 33.7 1.0
OD2 C:ASP173 3.2 27.7 1.0
CD2 C:HIS175 3.2 27.4 1.0
ZN C:ZN3400 3.4 49.4 1.0
OE2 C:GLU182 3.8 45.9 1.0
CB C:ALA36 4.0 33.0 1.0
CG C:GLU189 4.1 28.5 1.0
OD1 C:ASP148 4.2 35.8 1.0
ND1 C:HIS175 4.3 26.1 1.0
CG C:HIS175 4.4 26.3 1.0
CB C:ASP173 4.4 23.1 1.0
O C:ASP173 4.6 21.4 1.0
N C:ALA187 4.6 29.2 1.0
CA C:ASP173 4.9 21.8 1.0
C C:ASP173 4.9 22.1 1.0
CD C:GLU182 4.9 33.3 1.0
CB C:GLU189 5.0 28.4 1.0

Zinc binding site 7 out of 8 in 2f4l

Go back to Zinc Binding Sites List in 2f4l
Zinc binding site 7 out of 8 in the Crystal Structure of A Putative Acetamidase (TM0119) From Thermotoga Maritima MSB8 at 2.50 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Crystal Structure of A Putative Acetamidase (TM0119) From Thermotoga Maritima MSB8 at 2.50 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn4400

b:49.4
occ:1.00
 OD2 D:ASP173 2.2 28.7 1.0
OD1 D:ASP148 2.3 36.3 1.0
OD1 D:ASN146 2.3 29.6 1.0
OD2 D:ASP148 2.6 36.2 1.0
CG D:ASP148 2.8 33.4 1.0
O D:HOH4439 3.1 31.9 1.0
CG D:ASN146 3.1 27.9 1.0
CG D:ASP173 3.1 21.4 1.0
ND2 D:ASN146 3.2 30.7 1.0
ZN D:ZN4401 3.3 42.3 1.0
OD1 D:ASP173 3.5 22.7 1.0
OE2 D:GLU182 3.9 48.5 1.0
CE1 D:HIS175 4.1 33.5 1.0
OE1 D:GLU182 4.1 38.7 1.0
NE2 D:HIS175 4.2 29.1 1.0
CB D:ASP148 4.3 29.8 1.0
CD D:GLU182 4.4 35.4 1.0
CB D:ASP173 4.5 23.1 1.0
ND2 D:ASN50 4.5 38.2 1.0
CB D:ASN146 4.5 27.5 1.0
ND2 D:ASN268 4.6 27.9 1.0
O D:GLY124 4.8 24.4 1.0
CG2 D:VAL125 4.9 22.3 1.0
OD1 D:ASN268 4.9 29.0 1.0
C D:GLY124 5.0 25.5 1.0

Zinc binding site 8 out of 8 in 2f4l

Go back to Zinc Binding Sites List in 2f4l
Zinc binding site 8 out of 8 in the Crystal Structure of A Putative Acetamidase (TM0119) From Thermotoga Maritima MSB8 at 2.50 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Crystal Structure of A Putative Acetamidase (TM0119) From Thermotoga Maritima MSB8 at 2.50 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn4401

b:42.3
occ:1.00
 OE1 D:GLU189 2.0 33.6 1.0
OD1 D:ASP173 2.1 22.7 1.0
NE2 D:HIS175 2.1 29.1 1.0
OE2 D:GLU189 2.4 29.0 1.0
CD D:GLU189 2.5 27.9 1.0
CE1 D:HIS175 3.0 33.5 1.0
CG D:ASP173 3.1 21.4 1.0
CD2 D:HIS175 3.2 25.0 1.0
O D:HOH4439 3.3 31.9 1.0
OD2 D:ASP173 3.3 28.7 1.0
ZN D:ZN4400 3.3 49.4 1.0
OE2 D:GLU182 3.7 48.5 1.0
CG D:GLU189 4.0 28.2 1.0
CB D:ALA36 4.0 29.7 1.0
ND1 D:HIS175 4.2 26.4 1.0
CG D:HIS175 4.3 26.1 1.0
OD1 D:ASP148 4.4 36.3 1.0
O D:ASP173 4.4 22.0 1.0
CB D:ASP173 4.5 23.1 1.0
N D:ALA187 4.6 31.0 1.0
C D:ASP173 4.8 22.4 1.0
CA D:ASP173 4.9 22.8 1.0
CB D:GLU189 4.9 24.7 1.0
CD D:GLU182 4.9 35.4 1.0
CB D:ALA187 5.0 30.2 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Wed Oct 16 23:37:14 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy