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    PDB 1ctu-1de6
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    PDB 1kh5-1kys
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    PDB 1nyr-1os4
    PDB 1os9-1p9w
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    PDB 1u10-1ums
    PDB 1umt-1v67
    PDB 1v6g-1vrq
    PDB 1vs0-1wew
    PDB 1wfe-1wwf
    PDB 1wwg-1xb1
    PDB 1xb8-1xpz
    PDB 1xq0-1y5w
    PDB 1y5x-1ylk
    PDB 1ylo-1z8r
    PDB 1z93-1zkx
    PDB 1zl6-258l
    PDB 2a03-2afo
    PDB 2afs-2atq
    PDB 2au3-2bfz
    PDB 2bg2-2c3a
    PDB 2c4r-2cij
    PDB 2cim-2czr
    PDB 2d0w-2djw
    PDB 2dkc-2e1b
    PDB 2e1s-2eer
    PDB 2eex-2em4
      2eex
      2eg3
      2eg4
      2eg6
      2eg7
      2eg8
      2egm
      2egp
      2egq
      2eh1
      2eh9
      2ehe
      2ehs
      2eht
      2eih
      2eij
      2eik
      2eil
      2eim
      2ein
      2ej1
      2ej4
      2ejc
      2ejv
      2ek0
      2ek8
      2ek9
      2el4
      2el5
      2el6
      2eli
      2elm
      2eln
      2elo
      2elp
      2elq
      2elr
      2els
      2elt
      2elu
      2elv
      2elw
      2elx
      2ely
      2elz
      2em0
      2em1
      2em2
      2em3
      2em4
    PDB 2em5-2eoj
    PDB 2eok-2erq
    PDB 2esf-2fa7
    PDB 2fac-2fpx
    PDB 2fqp-2g84
    PDB 2g87-2gvf
    PDB 2gvi-2han
    PDB 2hap-2huc
    PDB 2hue-2imc
    PDB 2imr-2j65
    PDB 2j6a-2jq5
    PDB 2jr7-2kfn
    PDB 2kft-2l75
    PDB 2lgv-2nx9
    PDB 2nxa-2oc8
    PDB 2occ-2osm
    PDB 2oso-2p53
    PDB 2p57-2pow
    PDB 2ppb-2q8j
    PDB 2qa1-2qp6
    PDB 2qpj-2r71
    PDB 2r74-2sod
    PDB 2srt-2v86
    PDB 2v87-2vp7
    PDB 2vpb-2vyo
    PDB 2vz5-2wey
    PDB 2wfq-2wx0
    PDB 2wx1-2xam
    PDB 2xan-2xr9
    PDB 2xrg-2ytd
    PDB 2yte-2z30
    PDB 2z3g-2zet
    PDB 2zh0-3a32
    PDB 3a36-3aoi
    PDB 3at1-3bk1
    PDB 3bk2-3byr
    PDB 3byw-3cia
    PDB 3ciz-3d08
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    PDB 3dpe-3e1w
    PDB 3e1z-3ebh
    PDB 3ebi-3epk
    PDB 3epl-3f28
    PDB 3f2b-3fhe
    PDB 3fhp-3ful
    PDB 3fum-3g9y
    PDB 3ga3-3gpu
    PDB 3gpx-3h2w
    PDB 3h3e-3hfy
    PDB 3hgz-3hsn
    PDB 3hso-3i8v
    PDB 3i9b-3ij6
    PDB 3ijf-3ixe
    PDB 3iz0-3k34
    PDB 3k35-3kiy
    PDB 3kj1-3kvt
    PDB 3kwa-3lat
    PDB 3lcn-3lrr
    PDB 3ls1-3m1n
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    PDB 3ms0-3n63
    PDB 3n64-3nin
    PDB 3nis-3ny2
    PDB 3ny3-3ohc
    PDB 3ohd-3oyl
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    PDB 3pki-3r0d
    PDB 3rj7-3t74
    PDB 3t87-3u9g
    PDB 3ua7-3v24
    PDB 3v25-4agl
    PDB 4agm-4dih
    PDB 4dii-4efs
    PDB 4eg2-4fc8
    PDB 4fgm-6tli
    PDB 6tmn-9nse

Zinc in the structure of Crystal Structure of Threonine 3-Dehydrogenase Complexed With Nad+ (pdb 2ejv)






The binding sites of Zinc atom in the structure of Crystal Structure of Threonine 3-Dehydrogenase Complexed With Nad+ (pdb code 2ejv). This binding sites where shown with 5.0 Angstroms radius around Zinc atom.
The 2ejv structure was solved by R.OMI, T.YAO, M.GOTO, I.MIYAHARA, K.HIROTSU, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)20.0-2.5
Space groupP6122
a (A)135.758
b (A)135.758
c (A)268.593
alpha (°)90.00
beta (°)90.00
gamma (°)120.00
Rfactor (%)20.7
Rfree (%)23.6


Zinc Binding Sites:

Zinc binding site 1 out of 4 in 2ejv


Zinc binding site 1 out of 4 in 2ejv
Click to enlarge		stereopicture of Zinc binding site 1 out of 4 in 2ejv
Click to enlarge		Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Zinc in the PDB 2ejv. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Zinc atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Cys38, A: His63, A: Glu64, A: Glu148, A: Pro149, A: Lys336, A: Hoh1432,

conact list:


AtomAtomDistance (A)
ZnN A:Cys384.49
ZnCB A:Cys383.06
ZnSG A:Cys382.49
ZnCA A:Cys384.35
ZnNE2 A:His632.28
ZnND1 A:His634.32
ZnCD2 A:His632.94
ZnCE1 A:His633.38
ZnCG A:His634.15
ZnOE1 A:Glu644.28
ZnCB A:Glu644.66
ZnOE2 A:Glu642.24
ZnCD A:Glu643.09
ZnCG A:Glu643.24
ZnOE1 A:Glu1483.72
ZnOE2 A:Glu1484.70
ZnCD A:Glu1484.58
ZnCB A:Pro1494.76
ZnNZ A:Lys3364.96
ZnO A:Hoh14324.96

interactive model:


Zinc binding site 2 out of 4 in 2ejv


Zinc binding site 2 out of 4 in 2ejv
Click to enlarge		stereopicture of Zinc binding site 2 out of 4 in 2ejv
Click to enlarge		Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Zinc in the PDB 2ejv. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Zinc atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Val92, A: Cys93, A: His94, A: Ala95, A: Cys96, A: Cys99, A: Cys107, A: Leu108, A: Asn109,

conact list:


AtomAtomDistance (A)
ZnCB A:Val924.63
ZnC A:Val924.55
ZnCA A:Val924.89
ZnN A:Cys933.59
ZnCB A:Cys933.60
ZnSG A:Cys932.48
ZnC A:Cys934.11
ZnCA A:Cys933.91
ZnN A:His943.49
ZnC A:His944.77
ZnCA A:His944.41
ZnN A:Ala954.05
ZnC A:Ala954.71
ZnCA A:Ala955.00
ZnO A:Cys964.70
ZnN A:Cys963.91
ZnCB A:Cys963.55
ZnSG A:Cys962.38
ZnC A:Cys964.80
ZnCA A:Cys964.28
ZnN A:Cys994.25
ZnCB A:Cys993.43
ZnSG A:Cys992.36
ZnCA A:Cys994.42
ZnCB A:Cys1073.18
ZnSG A:Cys1072.57
ZnC A:Cys1074.30
ZnCA A:Cys1073.70
ZnN A:Leu1084.19
ZnN A:Asn1094.65
ZnND2 A:Asn1094.84

interactive model:


Zinc binding site 3 out of 4 in 2ejv


Zinc binding site 3 out of 4 in 2ejv
Click to enlarge		stereopicture of Zinc binding site 3 out of 4 in 2ejv
Click to enlarge		Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Zinc in the PDB 2ejv. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Zinc atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Cys38, B: Thr40, B: His63, B: Glu64, B: Glu148, B: Hoh2390,

conact list:


AtomAtomDistance (A)
ZnN B:Cys384.78
ZnCB B:Cys382.85
ZnSG B:Cys382.58
ZnCA B:Cys384.32
ZnCB B:Thr404.95
ZnOG1 B:Thr404.82
ZnNE2 B:His632.25
ZnND1 B:His634.17
ZnCD2 B:His633.33
ZnCE1 B:His633.01
ZnCG B:His634.34
ZnOE1 B:Glu644.55
ZnOE2 B:Glu642.64
ZnCD B:Glu643.44
ZnCG B:Glu643.60
ZnOE1 B:Glu1483.85
ZnOE2 B:Glu1484.78
ZnCD B:Glu1484.71
ZnO B:Hoh23904.59

interactive model:


Zinc binding site 4 out of 4 in 2ejv


Zinc binding site 4 out of 4 in 2ejv
Click to enlarge		stereopicture of Zinc binding site 4 out of 4 in 2ejv
Click to enlarge		Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Zinc in the PDB 2ejv. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Zinc atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Val92, B: Cys93, B: His94, B: Ala95, B: Cys96, B: Cys99, B: Cys107, B: Leu108, B: Asn109,

conact list:


AtomAtomDistance (A)
ZnCB B:Val924.72
ZnC B:Val924.70
ZnCA B:Val924.93
ZnN B:Cys933.59
ZnCB B:Cys933.59
ZnSG B:Cys932.41
ZnC B:Cys934.17
ZnCA B:Cys933.94
ZnN B:His943.75
ZnC B:His944.96
ZnCA B:His944.69
ZnN B:Ala954.24
ZnC B:Ala954.72
ZnO B:Cys964.88
ZnN B:Cys963.95
ZnCB B:Cys963.35
ZnSG B:Cys962.46
ZnC B:Cys964.85
ZnCA B:Cys964.22
ZnN B:Cys994.27
ZnCB B:Cys993.46
ZnSG B:Cys992.41
ZnCA B:Cys994.45
ZnCB B:Cys1073.21
ZnSG B:Cys1072.27
ZnC B:Cys1074.20
ZnCA B:Cys1073.69
ZnN B:Leu1084.09
ZnN B:Asn1094.49
ZnND2 B:Asn1094.67

interactive model:
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