Zinc in PDB 2ect: Solution Structure of the Zinc Finger, C3HC4 Type (Ring Finger) Domain of Ring Finger Protein 126
Zinc Binding Sites:
The binding sites of Zinc atom in the Solution Structure of the Zinc Finger, C3HC4 Type (Ring Finger) Domain of Ring Finger Protein 126
(pdb code 2ect). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the
Solution Structure of the Zinc Finger, C3HC4 Type (Ring Finger) Domain of Ring Finger Protein 126, PDB code: 2ect:
Jump to Zinc binding site number:
1;
2;
Zinc binding site 1 out
of 2 in 2ect
Go back to
Zinc Binding Sites List in 2ect
Zinc binding site 1 out
of 2 in the Solution Structure of the Zinc Finger, C3HC4 Type (Ring Finger) Domain of Ring Finger Protein 126
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Solution Structure of the Zinc Finger, C3HC4 Type (Ring Finger) Domain of Ring Finger Protein 126 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn201
b:0.0
occ:1.00
|
ND1
|
A:HIS41
|
2.1
|
0.0
|
1.0
|
SG
|
A:CYS44
|
2.2
|
0.0
|
1.0
|
SG
|
A:CYS21
|
2.3
|
0.0
|
1.0
|
SG
|
A:CYS18
|
2.4
|
0.0
|
1.0
|
HB2
|
A:HIS41
|
2.6
|
0.0
|
1.0
|
HB
|
A:VAL20
|
3.0
|
0.0
|
1.0
|
HB3
|
A:CYS18
|
3.0
|
0.0
|
1.0
|
CG
|
A:HIS41
|
3.1
|
0.0
|
1.0
|
H
|
A:CYS21
|
3.1
|
0.0
|
1.0
|
CE1
|
A:HIS41
|
3.1
|
0.0
|
1.0
|
CB
|
A:CYS18
|
3.2
|
0.0
|
1.0
|
HB2
|
A:CYS44
|
3.2
|
0.0
|
1.0
|
CB
|
A:CYS44
|
3.3
|
0.0
|
1.0
|
CB
|
A:HIS41
|
3.3
|
0.0
|
1.0
|
HE1
|
A:HIS41
|
3.4
|
0.0
|
1.0
|
HB3
|
A:CYS21
|
3.5
|
0.0
|
1.0
|
CB
|
A:CYS21
|
3.5
|
0.0
|
1.0
|
HB3
|
A:CYS44
|
3.6
|
0.0
|
1.0
|
HB2
|
A:CYS18
|
3.6
|
0.0
|
1.0
|
N
|
A:CYS21
|
3.8
|
0.0
|
1.0
|
H
|
A:HIS41
|
3.8
|
0.0
|
1.0
|
HB3
|
A:HIS41
|
3.9
|
0.0
|
1.0
|
HG22
|
A:VAL20
|
4.0
|
0.0
|
1.0
|
CB
|
A:VAL20
|
4.0
|
0.0
|
1.0
|
CD2
|
A:HIS41
|
4.2
|
0.0
|
1.0
|
NE2
|
A:HIS41
|
4.2
|
0.0
|
1.0
|
CA
|
A:CYS21
|
4.3
|
0.0
|
1.0
|
HB2
|
A:CYS21
|
4.4
|
0.0
|
1.0
|
N
|
A:HIS41
|
4.5
|
0.0
|
1.0
|
HG13
|
A:VAL20
|
4.5
|
0.0
|
1.0
|
CA
|
A:HIS41
|
4.5
|
0.0
|
1.0
|
H
|
A:LYS22
|
4.6
|
0.0
|
1.0
|
CG2
|
A:VAL20
|
4.6
|
0.0
|
1.0
|
CA
|
A:CYS18
|
4.6
|
0.0
|
1.0
|
C
|
A:VAL20
|
4.6
|
0.0
|
1.0
|
H
|
A:VAL20
|
4.6
|
0.0
|
1.0
|
CA
|
A:CYS44
|
4.7
|
0.0
|
1.0
|
CA
|
A:VAL20
|
4.8
|
0.0
|
1.0
|
O
|
A:CYS18
|
4.8
|
0.0
|
1.0
|
CG1
|
A:VAL20
|
4.8
|
0.0
|
1.0
|
H
|
A:GLU23
|
4.8
|
0.0
|
1.0
|
HB2
|
A:GLU23
|
4.8
|
0.0
|
1.0
|
C
|
A:CYS18
|
4.9
|
0.0
|
1.0
|
H
|
A:CYS44
|
4.9
|
0.0
|
1.0
|
N
|
A:VAL20
|
4.9
|
0.0
|
1.0
|
|
Zinc binding site 2 out
of 2 in 2ect
Go back to
Zinc Binding Sites List in 2ect
Zinc binding site 2 out
of 2 in the Solution Structure of the Zinc Finger, C3HC4 Type (Ring Finger) Domain of Ring Finger Protein 126
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Solution Structure of the Zinc Finger, C3HC4 Type (Ring Finger) Domain of Ring Finger Protein 126 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn401
b:0.0
occ:1.00
|
ND1
|
A:HIS38
|
2.0
|
0.0
|
1.0
|
SG
|
A:CYS58
|
2.2
|
0.0
|
1.0
|
SG
|
A:CYS36
|
2.4
|
0.0
|
1.0
|
SG
|
A:CYS55
|
2.4
|
0.0
|
1.0
|
CE1
|
A:HIS38
|
2.9
|
0.0
|
1.0
|
HB2
|
A:HIS38
|
3.0
|
0.0
|
1.0
|
H
|
A:CYS58
|
3.0
|
0.0
|
1.0
|
HE1
|
A:HIS38
|
3.1
|
0.0
|
1.0
|
CG
|
A:HIS38
|
3.1
|
0.0
|
1.0
|
HB2
|
A:CYS36
|
3.1
|
0.0
|
1.0
|
CB
|
A:CYS55
|
3.3
|
0.0
|
1.0
|
HB3
|
A:CYS55
|
3.3
|
0.0
|
1.0
|
HB2
|
A:CYS55
|
3.3
|
0.0
|
1.0
|
CB
|
A:CYS36
|
3.3
|
0.0
|
1.0
|
HB
|
A:VAL57
|
3.4
|
0.0
|
1.0
|
HB3
|
A:CYS58
|
3.4
|
0.0
|
1.0
|
CB
|
A:CYS58
|
3.4
|
0.0
|
1.0
|
CB
|
A:HIS38
|
3.5
|
0.0
|
1.0
|
HD11
|
A:LEU34
|
3.8
|
0.0
|
1.0
|
N
|
A:CYS58
|
3.8
|
0.0
|
1.0
|
HB2
|
A:LYS60
|
3.8
|
0.0
|
1.0
|
HZ
|
A:PHE40
|
3.8
|
0.0
|
1.0
|
HB3
|
A:CYS36
|
3.8
|
0.0
|
1.0
|
HB3
|
A:HIS38
|
3.9
|
0.0
|
1.0
|
H
|
A:LYS60
|
3.9
|
0.0
|
1.0
|
HG3
|
A:LYS60
|
4.0
|
0.0
|
1.0
|
NE2
|
A:HIS38
|
4.0
|
0.0
|
1.0
|
CD2
|
A:HIS38
|
4.1
|
0.0
|
1.0
|
CA
|
A:CYS58
|
4.1
|
0.0
|
1.0
|
H
|
A:ARG59
|
4.1
|
0.0
|
1.0
|
HB2
|
A:CYS58
|
4.3
|
0.0
|
1.0
|
CB
|
A:VAL57
|
4.4
|
0.0
|
1.0
|
H
|
A:VAL57
|
4.4
|
0.0
|
1.0
|
HE1
|
A:PHE40
|
4.5
|
0.0
|
1.0
|
O
|
A:CYS36
|
4.6
|
0.0
|
1.0
|
N
|
A:ARG59
|
4.6
|
0.0
|
1.0
|
CG
|
A:LYS60
|
4.6
|
0.0
|
1.0
|
CA
|
A:CYS36
|
4.6
|
0.0
|
1.0
|
HG2
|
A:LYS60
|
4.6
|
0.0
|
1.0
|
HG13
|
A:VAL57
|
4.6
|
0.0
|
1.0
|
CB
|
A:LYS60
|
4.7
|
0.0
|
1.0
|
HB2
|
A:LEU34
|
4.7
|
0.0
|
1.0
|
CD1
|
A:LEU34
|
4.7
|
0.0
|
1.0
|
C
|
A:CYS58
|
4.7
|
0.0
|
1.0
|
CA
|
A:CYS55
|
4.7
|
0.0
|
1.0
|
HD13
|
A:LEU34
|
4.7
|
0.0
|
1.0
|
CZ
|
A:PHE40
|
4.7
|
0.0
|
1.0
|
C
|
A:CYS36
|
4.8
|
0.0
|
1.0
|
HB3
|
A:LEU34
|
4.8
|
0.0
|
1.0
|
C
|
A:VAL57
|
4.8
|
0.0
|
1.0
|
N
|
A:LYS60
|
4.8
|
0.0
|
1.0
|
CA
|
A:HIS38
|
4.9
|
0.0
|
1.0
|
HG11
|
A:VAL57
|
4.9
|
0.0
|
1.0
|
HE2
|
A:HIS38
|
4.9
|
0.0
|
1.0
|
H
|
A:HIS38
|
4.9
|
0.0
|
1.0
|
CG1
|
A:VAL57
|
4.9
|
0.0
|
1.0
|
HG22
|
A:VAL57
|
5.0
|
0.0
|
1.0
|
|
Reference:
H.Abe,
K.Miyamoto,
N.Tochio,
T.Kigawa,
S.Yokoyama.
Solution Structure of the Zinc Finger, C3HC4 Type (Ring Finger) Domain of Ring Finger Protein 126 To Be Published.
Page generated: Wed Oct 16 23:05:24 2024
|