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Zinc in PDB 2ec7: Solution Structure of Human Immunodificiency Virus Type-2 Nucleocapsid Protein

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution Structure of Human Immunodificiency Virus Type-2 Nucleocapsid Protein (pdb code 2ec7). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of Human Immunodificiency Virus Type-2 Nucleocapsid Protein, PDB code: 2ec7:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2ec7

Go back to Zinc Binding Sites List in 2ec7
Zinc binding site 1 out of 2 in the Solution Structure of Human Immunodificiency Virus Type-2 Nucleocapsid Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of Human Immunodificiency Virus Type-2 Nucleocapsid Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn50

b:0.0
occ:1.00
NE2 A:HIS17 2.0 0.0 1.0
HB3 A:LYS14 2.2 0.0 1.0
HE1 A:HIS17 2.3 0.0 1.0
SG A:CYS12 2.3 0.0 1.0
SG A:CYS22 2.3 0.0 1.0
SG A:CYS9 2.3 0.0 1.0
CE1 A:HIS17 2.4 0.0 1.0
HB3 A:CYS9 3.0 0.0 1.0
CB A:CYS9 3.1 0.0 1.0
CB A:LYS14 3.1 0.0 1.0
HB2 A:LYS14 3.2 0.0 1.0
HB2 A:CYS9 3.2 0.0 1.0
CD2 A:HIS17 3.3 0.0 1.0
HG2 A:LYS14 3.6 0.0 1.0
ND1 A:HIS17 3.7 0.0 1.0
CG A:LYS14 3.8 0.0 1.0
CB A:CYS12 3.8 0.0 1.0
HG3 A:LYS14 3.9 0.0 1.0
HD2 A:HIS17 3.9 0.0 1.0
CB A:CYS22 3.9 0.0 1.0
HB2 A:CYS22 4.1 0.0 1.0
HB2 A:CYS12 4.1 0.0 1.0
H A:LYS14 4.1 0.0 1.0
CG A:HIS17 4.1 0.0 1.0
HB3 A:CYS12 4.2 0.0 1.0
CA A:LYS14 4.3 0.0 1.0
OD1 A:ASN11 4.3 0.0 1.0
N A:LYS14 4.3 0.0 1.0
HD1 A:HIS17 4.4 0.0 1.0
O A:LYS14 4.5 0.0 1.0
HB3 A:CYS22 4.5 0.0 1.0
CA A:CYS9 4.5 0.0 1.0
HA A:CYS22 4.5 0.0 1.0
H A:GLY13 4.6 0.0 1.0
O A:CYS9 4.7 0.0 1.0
H A:CYS12 4.8 0.0 1.0
C A:LYS14 4.9 0.0 1.0
CA A:CYS22 4.9 0.0 1.0
N A:GLY13 4.9 0.0 1.0
C A:CYS9 4.9 0.0 1.0
H A:CYS9 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 2ec7

Go back to Zinc Binding Sites List in 2ec7
Zinc binding site 2 out of 2 in the Solution Structure of Human Immunodificiency Virus Type-2 Nucleocapsid Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of Human Immunodificiency Virus Type-2 Nucleocapsid Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn51

b:0.0
occ:1.00
HB2 A:CYS30 1.7 0.0 1.0
NE2 A:HIS38 2.0 0.0 1.0
CB A:CYS30 2.0 0.0 1.0
HB3 A:CYS30 2.1 0.0 1.0
SG A:CYS30 2.3 0.0 1.0
SG A:CYS33 2.3 0.0 1.0
SG A:CYS43 2.3 0.0 1.0
CE1 A:HIS38 2.7 0.0 1.0
HB2 A:CYS43 2.8 0.0 1.0
HE1 A:HIS38 2.8 0.0 1.0
CD2 A:HIS38 3.1 0.0 1.0
CB A:CYS43 3.1 0.0 1.0
CA A:CYS30 3.5 0.0 1.0
HD2 A:HIS38 3.5 0.0 1.0
H A:GLY34 3.7 0.0 1.0
H A:CYS33 3.8 0.0 1.0
HB2 A:LYS35 3.8 0.0 1.0
ND1 A:HIS38 3.8 0.0 1.0
HA A:VAL39 3.9 0.0 1.0
HB3 A:CYS43 3.9 0.0 1.0
HA A:CYS43 3.9 0.0 1.0
HA A:CYS30 4.0 0.0 1.0
HA A:MET40 4.0 0.0 1.0
CG A:HIS38 4.0 0.0 1.0
HG2 A:MET40 4.0 0.0 1.0
CB A:CYS33 4.1 0.0 1.0
H A:TRP31 4.1 0.0 1.0
H A:CYS30 4.1 0.0 1.0
CA A:CYS43 4.1 0.0 1.0
C A:VAL39 4.2 0.0 1.0
C A:CYS30 4.2 0.0 1.0
N A:MET40 4.2 0.0 1.0
HD2 A:PRO44 4.3 0.0 1.0
N A:CYS30 4.3 0.0 1.0
H A:MET40 4.4 0.0 1.0
N A:TRP31 4.4 0.0 1.0
HB3 A:LYS32 4.4 0.0 1.0
CA A:VAL39 4.4 0.0 1.0
O A:VAL39 4.4 0.0 1.0
N A:CYS33 4.5 0.0 1.0
N A:GLY34 4.5 0.0 1.0
HB3 A:CYS33 4.5 0.0 1.0
O A:HIS38 4.5 0.0 1.0
H A:LYS32 4.6 0.0 1.0
HG3 A:LYS35 4.6 0.0 1.0
HD1 A:HIS38 4.6 0.0 1.0
HB2 A:CYS33 4.6 0.0 1.0
CA A:MET40 4.6 0.0 1.0
N A:VAL39 4.8 0.0 1.0
CB A:LYS35 4.8 0.0 1.0
C A:HIS38 4.8 0.0 1.0
HD3 A:LYS35 4.8 0.0 1.0
CA A:CYS33 4.8 0.0 1.0
HG3 A:MET40 4.9 0.0 1.0
CG A:MET40 4.9 0.0 1.0
O A:CYS30 4.9 0.0 1.0
H A:LYS35 5.0 0.0 1.0
H A:GLU45 5.0 0.0 1.0

Reference:

T.Matsui, T.Tanaka, H.Endoh, K.Sato, H.Tanaka, E.Miyauchi, Y.Kawashima, M.Nagai-Makabe, H.Komatsu, T.Kohno, T.Maeda, Y.Kodera. The Rna Recognition Mechanism of Human Immunodeficiency Virus (Hiv) Type 2 NCP8 Is Different From That of Hiv-1 NCP7 Biochemistry V. 48 4314 2009.
ISSN: ISSN 0006-2960
PubMed: 19334676
DOI: 10.1021/BI802364B
Page generated: Wed Dec 16 03:23:31 2020

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