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Zinc in PDB 2ebt: Solution Structure of Three Tandem Repeats of Zf-C2H2 Domains From Human Kruppel-Like Factor 5

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution Structure of Three Tandem Repeats of Zf-C2H2 Domains From Human Kruppel-Like Factor 5 (pdb code 2ebt). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Solution Structure of Three Tandem Repeats of Zf-C2H2 Domains From Human Kruppel-Like Factor 5, PDB code: 2ebt:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in 2ebt

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Zinc binding site 1 out of 3 in the Solution Structure of Three Tandem Repeats of Zf-C2H2 Domains From Human Kruppel-Like Factor 5


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of Three Tandem Repeats of Zf-C2H2 Domains From Human Kruppel-Like Factor 5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn100

b:0.0
occ:1.00
NE2 A:HIS397 2.0 0.0 1.0
NE2 A:HIS393 2.0 0.0 1.0
SG A:CYS380 2.3 0.0 1.0
SG A:CYS375 2.3 0.0 1.0
CD2 A:HIS397 2.8 0.0 1.0
HD2 A:HIS397 2.9 0.0 1.0
CE1 A:HIS393 2.9 0.0 1.0
CD2 A:HIS393 3.1 0.0 1.0
HE1 A:HIS393 3.1 0.0 1.0
CE1 A:HIS397 3.1 0.0 1.0
HB2 A:CYS380 3.2 0.0 1.0
CB A:CYS380 3.2 0.0 1.0
CB A:CYS375 3.3 0.0 1.0
HB3 A:CYS380 3.3 0.0 1.0
HB2 A:CYS375 3.3 0.0 1.0
HB3 A:TYR377 3.4 0.0 1.0
HD2 A:HIS393 3.4 0.0 1.0
HB3 A:CYS375 3.5 0.0 1.0
HE1 A:HIS397 3.5 0.0 1.0
HB2 A:TYR377 3.6 0.0 1.0
HB2 A:LYS382 3.7 0.0 1.0
CB A:TYR377 4.0 0.0 1.0
CG A:HIS397 4.0 0.0 1.0
ND1 A:HIS393 4.1 0.0 1.0
ND1 A:HIS397 4.1 0.0 1.0
CG A:HIS393 4.2 0.0 1.0
H A:LYS382 4.4 0.0 1.0
HD23 A:LEU394 4.6 0.0 1.0
HA A:LEU394 4.6 0.0 1.0
CA A:CYS380 4.6 0.0 1.0
CG A:TYR377 4.7 0.0 1.0
CB A:LYS382 4.7 0.0 1.0
CA A:CYS375 4.8 0.0 1.0
HD2 A:TYR377 4.8 0.0 1.0
H A:TYR377 4.9 0.0 1.0
HA A:CYS380 4.9 0.0 1.0
HD1 A:HIS393 4.9 0.0 1.0

Zinc binding site 2 out of 3 in 2ebt

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Zinc binding site 2 out of 3 in the Solution Structure of Three Tandem Repeats of Zf-C2H2 Domains From Human Kruppel-Like Factor 5


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of Three Tandem Repeats of Zf-C2H2 Domains From Human Kruppel-Like Factor 5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn200

b:0.0
occ:1.00
NE2 A:HIS423 2.0 0.0 1.0
NE2 A:HIS427 2.1 0.0 1.0
SG A:CYS405 2.3 0.0 1.0
SG A:CYS410 2.3 0.0 1.0
CD2 A:HIS427 2.9 0.0 1.0
CE1 A:HIS423 2.9 0.0 1.0
CD2 A:HIS423 3.1 0.0 1.0
CE1 A:HIS427 3.1 0.0 1.0
HD2 A:HIS427 3.1 0.0 1.0
HE1 A:HIS423 3.1 0.0 1.0
CB A:CYS410 3.2 0.0 1.0
HB3 A:CYS410 3.2 0.0 1.0
HB2 A:CYS405 3.3 0.0 1.0
CB A:CYS405 3.3 0.0 1.0
HB2 A:CYS410 3.3 0.0 1.0
HD2 A:HIS423 3.4 0.0 1.0
HB3 A:CYS405 3.4 0.0 1.0
HE1 A:HIS427 3.4 0.0 1.0
HB3 A:TRP407 3.7 0.0 1.0
HB2 A:TRP407 4.0 0.0 1.0
ND1 A:HIS423 4.1 0.0 1.0
CG A:HIS427 4.1 0.0 1.0
ND1 A:HIS427 4.2 0.0 1.0
CG A:HIS423 4.2 0.0 1.0
HB2 A:TRP412 4.3 0.0 1.0
CB A:TRP407 4.3 0.0 1.0
HA A:TYR424 4.4 0.0 1.0
HE2 A:PHE414 4.5 0.0 1.0
HD1 A:TRP412 4.6 0.0 1.0
CA A:CYS410 4.7 0.0 1.0
CA A:CYS405 4.7 0.0 1.0
H A:TRP412 4.8 0.0 1.0
HD1 A:TYR424 4.9 0.0 1.0
HD1 A:HIS423 4.9 0.0 1.0
CG A:TRP407 4.9 0.0 1.0
HA A:CYS410 5.0 0.0 1.0

Zinc binding site 3 out of 3 in 2ebt

Go back to Zinc Binding Sites List in 2ebt
Zinc binding site 3 out of 3 in the Solution Structure of Three Tandem Repeats of Zf-C2H2 Domains From Human Kruppel-Like Factor 5


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Solution Structure of Three Tandem Repeats of Zf-C2H2 Domains From Human Kruppel-Like Factor 5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn300

b:0.0
occ:1.00
NE2 A:HIS451 2.0 0.0 1.0
NE2 A:HIS455 2.1 0.0 1.0
SG A:CYS438 2.3 0.0 1.0
SG A:CYS435 2.3 0.0 1.0
CD2 A:HIS451 2.8 0.0 1.0
CD2 A:HIS455 2.9 0.0 1.0
HD2 A:HIS451 2.9 0.0 1.0
HD2 A:HIS455 3.0 0.0 1.0
H A:CYS438 3.0 0.0 1.0
CE1 A:HIS451 3.1 0.0 1.0
HB3 A:CYS435 3.1 0.0 1.0
CE1 A:HIS455 3.1 0.0 1.0
CB A:CYS435 3.2 0.0 1.0
HB3 A:CYS438 3.2 0.0 1.0
HB2 A:CYS435 3.3 0.0 1.0
CB A:CYS438 3.4 0.0 1.0
HE1 A:HIS451 3.5 0.0 1.0
HE1 A:HIS455 3.5 0.0 1.0
HB A:VAL437 3.8 0.0 1.0
N A:CYS438 3.9 0.0 1.0
CG A:HIS451 4.0 0.0 1.0
CG A:HIS455 4.1 0.0 1.0
ND1 A:HIS451 4.1 0.0 1.0
ND1 A:HIS455 4.2 0.0 1.0
HE1 A:PHE442 4.2 0.0 1.0
HB2 A:CYS438 4.2 0.0 1.0
CA A:CYS438 4.2 0.0 1.0
H A:ASN439 4.3 0.0 1.0
HD2 A:ARG440 4.4 0.0 1.0
HB2 A:ARG440 4.4 0.0 1.0
H A:GLY436 4.4 0.0 1.0
H A:ARG440 4.4 0.0 1.0
HZ A:PHE442 4.4 0.0 1.0
HA A:MET452 4.5 0.0 1.0
H A:VAL437 4.6 0.0 1.0
HE3 A:MET452 4.6 0.0 1.0
CA A:CYS435 4.6 0.0 1.0
N A:ASN439 4.9 0.0 1.0
CB A:VAL437 4.9 0.0 1.0
HD12 A:LEU448 4.9 0.0 1.0
HA A:CYS435 4.9 0.0 1.0
C A:CYS438 5.0 0.0 1.0
N A:VAL437 5.0 0.0 1.0

Reference:

T.Nagashima, F.Hayashi, S.Yokoyama. Solution Structure of Three Tandem Repeats of Zf-C2H2 Domains From Human Kruppel-Like Factor 5 To Be Published.
Page generated: Wed Dec 16 03:23:35 2020

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