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Zinc in PDB 2ebn: Crystal Structure of Endo-Beta-N-Acetylglucosaminidase F1, An Alpha(Slash)Beta-Barrel Enzyme Adapted For A Complex Substrate

Enzymatic activity of Crystal Structure of Endo-Beta-N-Acetylglucosaminidase F1, An Alpha(Slash)Beta-Barrel Enzyme Adapted For A Complex Substrate

All present enzymatic activity of Crystal Structure of Endo-Beta-N-Acetylglucosaminidase F1, An Alpha(Slash)Beta-Barrel Enzyme Adapted For A Complex Substrate:
3.2.1.96;

Protein crystallography data

The structure of Crystal Structure of Endo-Beta-N-Acetylglucosaminidase F1, An Alpha(Slash)Beta-Barrel Enzyme Adapted For A Complex Substrate, PDB code: 2ebn was solved by P.Van Roey, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 2.00
Space group P 61
Cell size a, b, c (Å), α, β, γ (°) 70.640, 70.640, 103.310, 90.00, 90.00, 120.00
R / Rfree (%) n/a / n/a

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Endo-Beta-N-Acetylglucosaminidase F1, An Alpha(Slash)Beta-Barrel Enzyme Adapted For A Complex Substrate (pdb code 2ebn). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Endo-Beta-N-Acetylglucosaminidase F1, An Alpha(Slash)Beta-Barrel Enzyme Adapted For A Complex Substrate, PDB code: 2ebn:

Zinc binding site 1 out of 1 in 2ebn

Go back to Zinc Binding Sites List in 2ebn
Zinc binding site 1 out of 1 in the Crystal Structure of Endo-Beta-N-Acetylglucosaminidase F1, An Alpha(Slash)Beta-Barrel Enzyme Adapted For A Complex Substrate


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Endo-Beta-N-Acetylglucosaminidase F1, An Alpha(Slash)Beta-Barrel Enzyme Adapted For A Complex Substrate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn301

b:43.2
occ:1.00
NE2 A:HIS95 2.2 17.3 1.0
O A:HOH379 2.9 2.0 1.0
CD2 A:HIS95 3.0 15.8 1.0
CE1 A:HIS95 3.4 16.8 1.0
O A:HOH451 3.5 41.4 1.0
ND2 A:ASN94 4.2 13.3 1.0
CG A:HIS95 4.3 16.1 1.0
ND1 A:HIS95 4.4 16.6 1.0

Reference:

P.Van Roey, V.Rao, T.H.Plummer Jr., A.L.Tarentino. Crystal Structure of Endo-Beta-N-Acetylglucosaminidase F1, An Alpha/Beta-Barrel Enzyme Adapted For A Complex Substrate. Biochemistry V. 33 13989 1994.
ISSN: ISSN 0006-2960
PubMed: 7947807
DOI: 10.1021/BI00251A005
Page generated: Wed Dec 16 03:23:28 2020

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