Zinc in PDB 2ea5: Solution Structure of the Ring Domain of the Human Cell Growth Regulator with Ring Finger Domain 1 Protein
Zinc Binding Sites:
The binding sites of Zinc atom in the Solution Structure of the Ring Domain of the Human Cell Growth Regulator with Ring Finger Domain 1 Protein
(pdb code 2ea5). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the
Solution Structure of the Ring Domain of the Human Cell Growth Regulator with Ring Finger Domain 1 Protein, PDB code: 2ea5:
Jump to Zinc binding site number:
1;
2;
Zinc binding site 1 out
of 2 in 2ea5
Go back to
Zinc Binding Sites List in 2ea5
Zinc binding site 1 out
of 2 in the Solution Structure of the Ring Domain of the Human Cell Growth Regulator with Ring Finger Domain 1 Protein
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Solution Structure of the Ring Domain of the Human Cell Growth Regulator with Ring Finger Domain 1 Protein within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn201
b:0.0
occ:1.00
|
SG
|
A:CYS42
|
2.2
|
0.0
|
1.0
|
SG
|
A:CYS21
|
2.3
|
0.0
|
1.0
|
SG
|
A:CYS18
|
2.4
|
0.0
|
1.0
|
SG
|
A:CYS39
|
2.4
|
0.0
|
1.0
|
H
|
A:CYS39
|
2.8
|
0.0
|
1.0
|
HB2
|
A:CYS39
|
3.0
|
0.0
|
1.0
|
H
|
A:CYS21
|
3.1
|
0.0
|
1.0
|
HB3
|
A:CYS18
|
3.2
|
0.0
|
1.0
|
CB
|
A:CYS18
|
3.2
|
0.0
|
1.0
|
HB2
|
A:CYS18
|
3.3
|
0.0
|
1.0
|
CB
|
A:CYS39
|
3.3
|
0.0
|
1.0
|
HB2
|
A:CYS42
|
3.4
|
0.0
|
1.0
|
HB
|
A:VAL20
|
3.4
|
0.0
|
1.0
|
CB
|
A:CYS42
|
3.4
|
0.0
|
1.0
|
HB3
|
A:CYS21
|
3.4
|
0.0
|
1.0
|
CB
|
A:CYS21
|
3.5
|
0.0
|
1.0
|
N
|
A:CYS39
|
3.7
|
0.0
|
1.0
|
N
|
A:CYS21
|
3.8
|
0.0
|
1.0
|
HB3
|
A:CYS42
|
3.8
|
0.0
|
1.0
|
H
|
A:GLN22
|
4.1
|
0.0
|
1.0
|
H
|
A:GLY24
|
4.1
|
0.0
|
1.0
|
CA
|
A:CYS39
|
4.1
|
0.0
|
1.0
|
HB3
|
A:CYS39
|
4.2
|
0.0
|
1.0
|
HA
|
A:LEU38
|
4.2
|
0.0
|
1.0
|
H
|
A:CYS42
|
4.2
|
0.0
|
1.0
|
CA
|
A:CYS21
|
4.2
|
0.0
|
1.0
|
H
|
A:ASN23
|
4.3
|
0.0
|
1.0
|
H
|
A:VAL20
|
4.4
|
0.0
|
1.0
|
HB2
|
A:CYS21
|
4.4
|
0.0
|
1.0
|
CB
|
A:VAL20
|
4.4
|
0.0
|
1.0
|
N
|
A:GLN22
|
4.6
|
0.0
|
1.0
|
HG11
|
A:VAL26
|
4.7
|
0.0
|
1.0
|
CA
|
A:CYS18
|
4.7
|
0.0
|
1.0
|
CA
|
A:CYS42
|
4.7
|
0.0
|
1.0
|
HG12
|
A:VAL20
|
4.8
|
0.0
|
1.0
|
C
|
A:CYS21
|
4.8
|
0.0
|
1.0
|
HA
|
A:CYS39
|
4.8
|
0.0
|
1.0
|
C
|
A:VAL20
|
4.8
|
0.0
|
1.0
|
C
|
A:LEU38
|
4.8
|
0.0
|
1.0
|
N
|
A:CYS42
|
4.8
|
0.0
|
1.0
|
HD22
|
A:LEU38
|
4.9
|
0.0
|
1.0
|
HG21
|
A:VAL20
|
5.0
|
0.0
|
1.0
|
N
|
A:GLY24
|
5.0
|
0.0
|
1.0
|
CA
|
A:LEU38
|
5.0
|
0.0
|
1.0
|
|
Zinc binding site 2 out
of 2 in 2ea5
Go back to
Zinc Binding Sites List in 2ea5
Zinc binding site 2 out
of 2 in the Solution Structure of the Ring Domain of the Human Cell Growth Regulator with Ring Finger Domain 1 Protein
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Solution Structure of the Ring Domain of the Human Cell Growth Regulator with Ring Finger Domain 1 Protein within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn401
b:0.0
occ:1.00
|
ND1
|
A:HIS35
|
1.9
|
0.0
|
1.0
|
SG
|
A:CYS52
|
2.2
|
0.0
|
1.0
|
SG
|
A:CYS49
|
2.4
|
0.0
|
1.0
|
SG
|
A:CYS33
|
2.4
|
0.0
|
1.0
|
HB2
|
A:HIS35
|
2.6
|
0.0
|
1.0
|
CG
|
A:HIS35
|
2.6
|
0.0
|
1.0
|
CE1
|
A:HIS35
|
2.7
|
0.0
|
1.0
|
H
|
A:CYS52
|
3.0
|
0.0
|
1.0
|
CB
|
A:HIS35
|
3.1
|
0.0
|
1.0
|
HB2
|
A:CYS33
|
3.1
|
0.0
|
1.0
|
HE1
|
A:HIS35
|
3.1
|
0.0
|
1.0
|
HB3
|
A:CYS52
|
3.2
|
0.0
|
1.0
|
HB3
|
A:CYS49
|
3.2
|
0.0
|
1.0
|
CB
|
A:CYS49
|
3.3
|
0.0
|
1.0
|
CB
|
A:CYS33
|
3.3
|
0.0
|
1.0
|
CB
|
A:CYS52
|
3.3
|
0.0
|
1.0
|
HB2
|
A:CYS49
|
3.3
|
0.0
|
1.0
|
HB3
|
A:CYS33
|
3.5
|
0.0
|
1.0
|
CD2
|
A:HIS35
|
3.6
|
0.0
|
1.0
|
NE2
|
A:HIS35
|
3.6
|
0.0
|
1.0
|
HB3
|
A:HIS35
|
3.6
|
0.0
|
1.0
|
HB2
|
A:MET51
|
3.6
|
0.0
|
1.0
|
N
|
A:CYS52
|
3.8
|
0.0
|
1.0
|
HE2
|
A:MET51
|
3.8
|
0.0
|
1.0
|
H
|
A:HIS35
|
4.1
|
0.0
|
1.0
|
CA
|
A:CYS52
|
4.1
|
0.0
|
1.0
|
HB2
|
A:LEU30
|
4.1
|
0.0
|
1.0
|
HB2
|
A:CYS52
|
4.2
|
0.0
|
1.0
|
HD11
|
A:LEU30
|
4.3
|
0.0
|
1.0
|
HB3
|
A:MET51
|
4.4
|
0.0
|
1.0
|
CA
|
A:HIS35
|
4.4
|
0.0
|
1.0
|
H
|
A:ARG53
|
4.4
|
0.0
|
1.0
|
HE2
|
A:HIS35
|
4.4
|
0.0
|
1.0
|
N
|
A:HIS35
|
4.5
|
0.0
|
1.0
|
CB
|
A:MET51
|
4.5
|
0.0
|
1.0
|
H
|
A:MET51
|
4.5
|
0.0
|
1.0
|
HB3
|
A:GLN54
|
4.5
|
0.0
|
1.0
|
HD2
|
A:HIS35
|
4.5
|
0.0
|
1.0
|
H
|
A:GLN54
|
4.5
|
0.0
|
1.0
|
CA
|
A:CYS33
|
4.7
|
0.0
|
1.0
|
CA
|
A:CYS49
|
4.7
|
0.0
|
1.0
|
O
|
A:LEU30
|
4.8
|
0.0
|
1.0
|
CE
|
A:MET51
|
4.8
|
0.0
|
1.0
|
C
|
A:MET51
|
4.9
|
0.0
|
1.0
|
N
|
A:ARG53
|
4.9
|
0.0
|
1.0
|
C
|
A:CYS52
|
4.9
|
0.0
|
1.0
|
HA
|
A:HIS35
|
5.0
|
0.0
|
1.0
|
C
|
A:CYS33
|
5.0
|
0.0
|
1.0
|
|
Reference:
K.Miyamoto,
T.Tomizawa,
S.Koshiba,
S.Watanabe,
T.Harada,
T.Kigawa,
S.Yokoyama.
Solution Structure of the Ring Domain of the Human Cell Growth Regulator with Ring Finger Domain 1 Protein To Be Published.
Page generated: Wed Oct 16 23:02:17 2024
|