Zinc in PDB 2e6r: Solution Structure of the Phd Domain in Smcy Protein

The binding sites of Zinc atom in the Solution Structure of the Phd Domain in Smcy Protein (pdb code 2e6r). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of the Phd Domain in Smcy Protein, PDB code: 2e6r:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Solution Structure of the Phd Domain in Smcy Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the Phd Domain in Smcy Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:0.0 occ:1.00 ND1 A:HIS42 2.1 0.0 1.0 SG A:CYS45 2.2 0.0 1.0 SG A:CYS22 2.3 0.0 1.0 SG A:CYS19 2.3 0.0 1.0 CE1 A:HIS42 2.7 0.0 1.0 HE1 A:HIS42 3.0 0.0 1.0 CG A:HIS42 3.0 0.0 1.0 HB2 A:HIS42 3.0 0.0 1.0 H A:CYS22 3.2 0.0 1.0 CB A:CYS19 3.2 0.0 1.0 HB2 A:CYS19 3.2 0.0 1.0 HB3 A:CYS19 3.3 0.0 1.0 HB A:VAL21 3.3 0.0 1.0 HB3 A:CYS22 3.4 0.0 1.0 CB A:CYS22 3.5 0.0 1.0 CB A:CYS45 3.5 0.0 1.0 HB2 A:CYS45 3.5 0.0 1.0 CB A:HIS42 3.6 0.0 1.0 H A:HIS42 3.7 0.0 1.0 NE2 A:HIS42 3.7 0.0 1.0 HB3 A:CYS45 3.8 0.0 1.0 N A:CYS22 3.8 0.0 1.0 CD2 A:HIS42 3.9 0.0 1.0 H A:VAL21 4.2 0.0 1.0 HB2 A:ARG24 4.2 0.0 1.0 CA A:CYS22 4.3 0.0 1.0 HB3 A:HIS42 4.3 0.0 1.0 HE2 A:PHE44 4.3 0.0 1.0 H A:SER23 4.3 0.0 1.0 HB2 A:CYS22 4.4 0.0 1.0 CB A:VAL21 4.4 0.0 1.0 N A:HIS42 4.4 0.0 1.0 HE2 A:HIS42 4.5 0.0 1.0 CE2 A:PHE44 4.6 0.0 1.0 CA A:HIS42 4.7 0.0 1.0 CA A:CYS19 4.7 0.0 1.0 H A:ARG24 4.7 0.0 1.0 C A:VAL21 4.8 0.0 1.0 HD2 A:HIS42 4.8 0.0 1.0 HG23 A:VAL21 4.9 0.0 1.0 CA A:CYS45 4.9 0.0 1.0 HG12 A:VAL21 4.9 0.0 1.0 N A:VAL21 4.9 0.0 1.0 N A:SER23 4.9 0.0 1.0 CA A:VAL21 4.9 0.0 1.0 HA A:CYS19 5.0 0.0 1.0 C A:CYS22 5.0 0.0 1.0

Zinc binding site 2 out of 2 in the Solution Structure of the Phd Domain in Smcy Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the Phd Domain in Smcy Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:0.0 occ:1.00 SG A:CYS60 2.2 0.0 1.0 SG A:CYS37 2.3 0.0 1.0 SG A:CYS34 2.3 0.0 1.0 SG A:CYS63 2.3 0.0 1.0 HB2 A:CYS63 2.9 0.0 1.0 CB A:CYS63 3.2 0.0 1.0 CB A:CYS34 3.2 0.0 1.0 HB3 A:CYS34 3.3 0.0 1.0 HB2 A:CYS34 3.3 0.0 1.0 H A:CYS37 3.3 0.0 1.0 HB3 A:CYS37 3.4 0.0 1.0 H A:CYS60 3.4 0.0 1.0 HB3 A:CYS60 3.5 0.0 1.0 CB A:CYS37 3.5 0.0 1.0 CB A:CYS60 3.5 0.0 1.0 N A:CYS37 3.9 0.0 1.0 HB2 A:ASP39 3.9 0.0 1.0 HB3 A:CYS63 3.9 0.0 1.0 H A:CYS63 4.0 0.0 1.0 N A:CYS60 4.2 0.0 1.0 N A:CYS63 4.2 0.0 1.0 CA A:CYS37 4.3 0.0 1.0 CA A:CYS63 4.3 0.0 1.0 HB2 A:CYS37 4.3 0.0 1.0 HB2 A:CYS60 4.3 0.0 1.0 CA A:CYS60 4.4 0.0 1.0 HE2 A:TYR41 4.5 0.0 1.0 HA3 A:GLY36 4.5 0.0 1.0 H A:ASP39 4.5 0.0 1.0 H A:GLY36 4.6 0.0 1.0 HB2 A:LYS62 4.7 0.0 1.0 CA A:CYS34 4.7 0.0 1.0 O A:CYS60 4.7 0.0 1.0 HA A:CYS63 4.7 0.0 1.0 H A:ASP38 4.7 0.0 1.0 HB3 A:LYS62 4.7 0.0 1.0 C A:GLY36 4.7 0.0 1.0 C A:CYS60 4.8 0.0 1.0 HG2 A:ARG59 4.9 0.0 1.0 HD3 A:ARG59 4.9 0.0 1.0 CB A:ASP39 4.9 0.0 1.0 C A:CYS37 4.9 0.0 1.0 CA A:GLY36 5.0 0.0 1.0 C A:LYS62 5.0 0.0 1.0

S.Kadirvel, F.He, Y.Muto, M.Inoue, T.Kigawa, M.Shirouzu, T.Terada, S.Yokoyama. Solution Structure of the Phd Domain in Smcy Protein To Be Published.