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Zinc in PDB 2e5r: Solution Structure of the Zz Domain of Dystrobrevin Alpha (Dystrobrevin-Alpha)

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution Structure of the Zz Domain of Dystrobrevin Alpha (Dystrobrevin-Alpha) (pdb code 2e5r). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of the Zz Domain of Dystrobrevin Alpha (Dystrobrevin-Alpha), PDB code: 2e5r:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2e5r

Go back to Zinc Binding Sites List in 2e5r
Zinc binding site 1 out of 2 in the Solution Structure of the Zz Domain of Dystrobrevin Alpha (Dystrobrevin-Alpha)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the Zz Domain of Dystrobrevin Alpha (Dystrobrevin-Alpha) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:0.0
occ:1.00
SG A:CYS41 2.3 0.0 1.0
SG A:CYS38 2.3 0.0 1.0
SG A:CYS17 2.3 0.0 1.0
SG A:CYS14 2.3 0.0 1.0
H A:CYS38 2.9 0.0 1.0
HB2 A:CYS14 3.1 0.0 1.0
HB3 A:CYS17 3.2 0.0 1.0
CB A:CYS14 3.2 0.0 1.0
HB2 A:CYS41 3.2 0.0 1.0
H A:CYS41 3.3 0.0 1.0
HB3 A:CYS14 3.4 0.0 1.0
CB A:CYS41 3.4 0.0 1.0
CB A:CYS17 3.4 0.0 1.0
CB A:CYS38 3.5 0.0 1.0
H A:CYS17 3.5 0.0 1.0
HB3 A:CYS38 3.5 0.0 1.0
N A:CYS38 3.6 0.0 1.0
HD23 A:LEU37 3.9 0.0 1.0
HA A:LEU37 4.0 0.0 1.0
N A:CYS41 4.1 0.0 1.0
CA A:CYS38 4.1 0.0 1.0
HB3 A:CYS41 4.2 0.0 1.0
H A:SER19 4.2 0.0 1.0
HB2 A:SER19 4.2 0.0 1.0
HB2 A:CYS17 4.2 0.0 1.0
N A:CYS17 4.2 0.0 1.0
HB2 A:ASP40 4.2 0.0 1.0
CA A:CYS41 4.3 0.0 1.0
CA A:CYS17 4.4 0.0 1.0
HB2 A:CYS38 4.4 0.0 1.0
H A:HIS18 4.5 0.0 1.0
HB3 A:LEU37 4.5 0.0 1.0
C A:LEU37 4.6 0.0 1.0
HB3 A:TYR16 4.6 0.0 1.0
H A:TYR16 4.6 0.0 1.0
HA A:CYS41 4.6 0.0 1.0
CA A:CYS14 4.7 0.0 1.0
H A:SER15 4.7 0.0 1.0
CA A:LEU37 4.7 0.0 1.0
C A:CYS38 4.8 0.0 1.0
HB3 A:SER19 4.8 0.0 1.0
N A:HIS18 4.9 0.0 1.0
HA A:CYS14 4.9 0.0 1.0
O A:CYS38 4.9 0.0 1.0
C A:CYS17 4.9 0.0 1.0
CD2 A:LEU37 4.9 0.0 1.0
HE1 A:HIS46 4.9 0.0 1.0

Zinc binding site 2 out of 2 in 2e5r

Go back to Zinc Binding Sites List in 2e5r
Zinc binding site 2 out of 2 in the Solution Structure of the Zz Domain of Dystrobrevin Alpha (Dystrobrevin-Alpha)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the Zz Domain of Dystrobrevin Alpha (Dystrobrevin-Alpha) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:0.0
occ:1.00
ND1 A:HIS55 2.1 0.0 1.0
ND1 A:HIS51 2.1 0.0 1.0
SG A:CYS32 2.3 0.0 1.0
SG A:CYS29 2.4 0.0 1.0
CE1 A:HIS51 2.6 0.0 1.0
HE1 A:HIS51 2.6 0.0 1.0
HB3 A:HIS55 2.8 0.0 1.0
CG A:HIS55 3.0 0.0 1.0
CE1 A:HIS55 3.1 0.0 1.0
CG A:HIS51 3.2 0.0 1.0
CB A:HIS55 3.2 0.0 1.0
HA A:HIS51 3.3 0.0 1.0
HB2 A:HIS55 3.3 0.0 1.0
HB2 A:CYS32 3.4 0.0 1.0
HE1 A:HIS55 3.4 0.0 1.0
O A:GLN31 3.5 0.0 1.0
CB A:CYS29 3.5 0.0 1.0
CB A:CYS32 3.5 0.0 1.0
HB2 A:CYS29 3.5 0.0 1.0
H A:SER52 3.5 0.0 1.0
HB3 A:CYS29 3.7 0.0 1.0
NE2 A:HIS51 3.8 0.0 1.0
HB2 A:HIS51 3.8 0.0 1.0
CB A:HIS51 3.9 0.0 1.0
CA A:HIS51 4.0 0.0 1.0
CD2 A:HIS51 4.1 0.0 1.0
HB3 A:CYS32 4.1 0.0 1.0
CD2 A:HIS55 4.1 0.0 1.0
NE2 A:HIS55 4.2 0.0 1.0
C A:GLN31 4.3 0.0 1.0
HB3 A:TYR35 4.3 0.0 1.0
N A:SER52 4.4 0.0 1.0
HD2 A:TYR35 4.4 0.0 1.0
HB2 A:TYR35 4.5 0.0 1.0
CD2 A:TYR35 4.5 0.0 1.0
HE2 A:HIS51 4.5 0.0 1.0
H A:GLN31 4.6 0.0 1.0
CG A:TYR35 4.6 0.0 1.0
CA A:CYS32 4.7 0.0 1.0
CB A:TYR35 4.7 0.0 1.0
CA A:HIS55 4.7 0.0 1.0
H A:GLN30 4.7 0.0 1.0
C A:HIS51 4.8 0.0 1.0
HA A:CYS32 4.8 0.0 1.0
N A:CYS32 4.9 0.0 1.0
O A:SER52 4.9 0.0 1.0
CA A:CYS29 4.9 0.0 1.0
HB3 A:HIS51 4.9 0.0 1.0

Reference:

W.Dang, Y.Muto, M.Inoue, T.Kigawa, M.Shirouzu, T.Terada, S.Yokoyama. Solution Structure of the Zz Domain of Dystrobrevin Alpha (Dystrobrevin-Alpha) To Be Published.
Page generated: Wed Oct 16 22:59:07 2024

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