Zinc in PDB 2e5r: Solution Structure of the Zz Domain of Dystrobrevin Alpha (Dystrobrevin-Alpha)
Zinc Binding Sites:
The binding sites of Zinc atom in the Solution Structure of the Zz Domain of Dystrobrevin Alpha (Dystrobrevin-Alpha)
(pdb code 2e5r). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the
Solution Structure of the Zz Domain of Dystrobrevin Alpha (Dystrobrevin-Alpha), PDB code: 2e5r:
Jump to Zinc binding site number:
1;
2;
Zinc binding site 1 out
of 2 in 2e5r
Go back to
Zinc Binding Sites List in 2e5r
Zinc binding site 1 out
of 2 in the Solution Structure of the Zz Domain of Dystrobrevin Alpha (Dystrobrevin-Alpha)
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Solution Structure of the Zz Domain of Dystrobrevin Alpha (Dystrobrevin-Alpha) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn201
b:0.0
occ:1.00
|
SG
|
A:CYS41
|
2.3
|
0.0
|
1.0
|
SG
|
A:CYS38
|
2.3
|
0.0
|
1.0
|
SG
|
A:CYS17
|
2.3
|
0.0
|
1.0
|
SG
|
A:CYS14
|
2.3
|
0.0
|
1.0
|
H
|
A:CYS38
|
2.9
|
0.0
|
1.0
|
HB2
|
A:CYS14
|
3.1
|
0.0
|
1.0
|
HB3
|
A:CYS17
|
3.2
|
0.0
|
1.0
|
CB
|
A:CYS14
|
3.2
|
0.0
|
1.0
|
HB2
|
A:CYS41
|
3.2
|
0.0
|
1.0
|
H
|
A:CYS41
|
3.3
|
0.0
|
1.0
|
HB3
|
A:CYS14
|
3.4
|
0.0
|
1.0
|
CB
|
A:CYS41
|
3.4
|
0.0
|
1.0
|
CB
|
A:CYS17
|
3.4
|
0.0
|
1.0
|
CB
|
A:CYS38
|
3.5
|
0.0
|
1.0
|
H
|
A:CYS17
|
3.5
|
0.0
|
1.0
|
HB3
|
A:CYS38
|
3.5
|
0.0
|
1.0
|
N
|
A:CYS38
|
3.6
|
0.0
|
1.0
|
HD23
|
A:LEU37
|
3.9
|
0.0
|
1.0
|
HA
|
A:LEU37
|
4.0
|
0.0
|
1.0
|
N
|
A:CYS41
|
4.1
|
0.0
|
1.0
|
CA
|
A:CYS38
|
4.1
|
0.0
|
1.0
|
HB3
|
A:CYS41
|
4.2
|
0.0
|
1.0
|
H
|
A:SER19
|
4.2
|
0.0
|
1.0
|
HB2
|
A:SER19
|
4.2
|
0.0
|
1.0
|
HB2
|
A:CYS17
|
4.2
|
0.0
|
1.0
|
N
|
A:CYS17
|
4.2
|
0.0
|
1.0
|
HB2
|
A:ASP40
|
4.2
|
0.0
|
1.0
|
CA
|
A:CYS41
|
4.3
|
0.0
|
1.0
|
CA
|
A:CYS17
|
4.4
|
0.0
|
1.0
|
HB2
|
A:CYS38
|
4.4
|
0.0
|
1.0
|
H
|
A:HIS18
|
4.5
|
0.0
|
1.0
|
HB3
|
A:LEU37
|
4.5
|
0.0
|
1.0
|
C
|
A:LEU37
|
4.6
|
0.0
|
1.0
|
HB3
|
A:TYR16
|
4.6
|
0.0
|
1.0
|
H
|
A:TYR16
|
4.6
|
0.0
|
1.0
|
HA
|
A:CYS41
|
4.6
|
0.0
|
1.0
|
CA
|
A:CYS14
|
4.7
|
0.0
|
1.0
|
H
|
A:SER15
|
4.7
|
0.0
|
1.0
|
CA
|
A:LEU37
|
4.7
|
0.0
|
1.0
|
C
|
A:CYS38
|
4.8
|
0.0
|
1.0
|
HB3
|
A:SER19
|
4.8
|
0.0
|
1.0
|
N
|
A:HIS18
|
4.9
|
0.0
|
1.0
|
HA
|
A:CYS14
|
4.9
|
0.0
|
1.0
|
O
|
A:CYS38
|
4.9
|
0.0
|
1.0
|
C
|
A:CYS17
|
4.9
|
0.0
|
1.0
|
CD2
|
A:LEU37
|
4.9
|
0.0
|
1.0
|
HE1
|
A:HIS46
|
4.9
|
0.0
|
1.0
|
|
Zinc binding site 2 out
of 2 in 2e5r
Go back to
Zinc Binding Sites List in 2e5r
Zinc binding site 2 out
of 2 in the Solution Structure of the Zz Domain of Dystrobrevin Alpha (Dystrobrevin-Alpha)
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Solution Structure of the Zz Domain of Dystrobrevin Alpha (Dystrobrevin-Alpha) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn401
b:0.0
occ:1.00
|
ND1
|
A:HIS55
|
2.1
|
0.0
|
1.0
|
ND1
|
A:HIS51
|
2.1
|
0.0
|
1.0
|
SG
|
A:CYS32
|
2.3
|
0.0
|
1.0
|
SG
|
A:CYS29
|
2.4
|
0.0
|
1.0
|
CE1
|
A:HIS51
|
2.6
|
0.0
|
1.0
|
HE1
|
A:HIS51
|
2.6
|
0.0
|
1.0
|
HB3
|
A:HIS55
|
2.8
|
0.0
|
1.0
|
CG
|
A:HIS55
|
3.0
|
0.0
|
1.0
|
CE1
|
A:HIS55
|
3.1
|
0.0
|
1.0
|
CG
|
A:HIS51
|
3.2
|
0.0
|
1.0
|
CB
|
A:HIS55
|
3.2
|
0.0
|
1.0
|
HA
|
A:HIS51
|
3.3
|
0.0
|
1.0
|
HB2
|
A:HIS55
|
3.3
|
0.0
|
1.0
|
HB2
|
A:CYS32
|
3.4
|
0.0
|
1.0
|
HE1
|
A:HIS55
|
3.4
|
0.0
|
1.0
|
O
|
A:GLN31
|
3.5
|
0.0
|
1.0
|
CB
|
A:CYS29
|
3.5
|
0.0
|
1.0
|
CB
|
A:CYS32
|
3.5
|
0.0
|
1.0
|
HB2
|
A:CYS29
|
3.5
|
0.0
|
1.0
|
H
|
A:SER52
|
3.5
|
0.0
|
1.0
|
HB3
|
A:CYS29
|
3.7
|
0.0
|
1.0
|
NE2
|
A:HIS51
|
3.8
|
0.0
|
1.0
|
HB2
|
A:HIS51
|
3.8
|
0.0
|
1.0
|
CB
|
A:HIS51
|
3.9
|
0.0
|
1.0
|
CA
|
A:HIS51
|
4.0
|
0.0
|
1.0
|
CD2
|
A:HIS51
|
4.1
|
0.0
|
1.0
|
HB3
|
A:CYS32
|
4.1
|
0.0
|
1.0
|
CD2
|
A:HIS55
|
4.1
|
0.0
|
1.0
|
NE2
|
A:HIS55
|
4.2
|
0.0
|
1.0
|
C
|
A:GLN31
|
4.3
|
0.0
|
1.0
|
HB3
|
A:TYR35
|
4.3
|
0.0
|
1.0
|
N
|
A:SER52
|
4.4
|
0.0
|
1.0
|
HD2
|
A:TYR35
|
4.4
|
0.0
|
1.0
|
HB2
|
A:TYR35
|
4.5
|
0.0
|
1.0
|
CD2
|
A:TYR35
|
4.5
|
0.0
|
1.0
|
HE2
|
A:HIS51
|
4.5
|
0.0
|
1.0
|
H
|
A:GLN31
|
4.6
|
0.0
|
1.0
|
CG
|
A:TYR35
|
4.6
|
0.0
|
1.0
|
CA
|
A:CYS32
|
4.7
|
0.0
|
1.0
|
CB
|
A:TYR35
|
4.7
|
0.0
|
1.0
|
CA
|
A:HIS55
|
4.7
|
0.0
|
1.0
|
H
|
A:GLN30
|
4.7
|
0.0
|
1.0
|
C
|
A:HIS51
|
4.8
|
0.0
|
1.0
|
HA
|
A:CYS32
|
4.8
|
0.0
|
1.0
|
N
|
A:CYS32
|
4.9
|
0.0
|
1.0
|
O
|
A:SER52
|
4.9
|
0.0
|
1.0
|
CA
|
A:CYS29
|
4.9
|
0.0
|
1.0
|
HB3
|
A:HIS51
|
4.9
|
0.0
|
1.0
|
|
Reference:
W.Dang,
Y.Muto,
M.Inoue,
T.Kigawa,
M.Shirouzu,
T.Terada,
S.Yokoyama.
Solution Structure of the Zz Domain of Dystrobrevin Alpha (Dystrobrevin-Alpha) To Be Published.
Page generated: Wed Oct 16 22:59:07 2024
|