Zinc in PDB 2dyx: Structure of the Complex of Lactoferrin C-Lobe with Melibiose at 2.0 A Resolution

The structure of Structure of the Complex of Lactoferrin C-Lobe with Melibiose at 2.0 A Resolution, PDB code: 2dyx was solved by R.Mir, R.Prem Kumar, M.Sinha, N.Singh, S.Sharma, P.Kaur, A.Bhushan, T.P.Singh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 2.00
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	63.588, 50.400, 65.930, 90.00, 107.86, 90.00
R / Rfree (%)	17.2 / 20.1

The structure of Structure of the Complex of Lactoferrin C-Lobe with Melibiose at 2.0 A Resolution also contains other interesting chemical elements:

Iron

(Fe)

1 atom

The binding sites of Zinc atom in the Structure of the Complex of Lactoferrin C-Lobe with Melibiose at 2.0 A Resolution (pdb code 2dyx). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of the Complex of Lactoferrin C-Lobe with Melibiose at 2.0 A Resolution, PDB code: 2dyx:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Structure of the Complex of Lactoferrin C-Lobe with Melibiose at 2.0 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the Complex of Lactoferrin C-Lobe with Melibiose at 2.0 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1004 b:20.5 occ:1.00 O A:HOH1163 2.2 32.2 1.0 OE2 A:GLU659 2.2 25.7 1.0 OE1 A:GLU659 2.3 22.6 1.0 CD A:GLU659 2.5 25.0 1.0 O A:GLY653 3.8 34.5 1.0 CG A:GLU659 4.0 24.8 1.0 O A:HOH1254 4.4 44.5 1.0 O A:ARG654 4.5 27.9 1.0 O A:HOH1295 4.5 53.4 1.0 CA A:PRO655 4.6 26.6 1.0 N A:THR656 4.8 25.6 1.0 CB A:GLU659 4.8 22.5 1.0 O A:HOH1291 4.9 47.4 1.0 C A:GLY653 4.9 35.2 1.0

Zinc binding site 2 out of 2 in the Structure of the Complex of Lactoferrin C-Lobe with Melibiose at 2.0 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of the Complex of Lactoferrin C-Lobe with Melibiose at 2.0 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1005 b:24.8 occ:1.00 O A:HOH1147 1.9 35.5 1.0 NE2 A:HIS588 2.1 27.9 1.0 O A:HOH1283 2.3 39.0 1.0 O A:HOH1148 2.8 37.8 1.0 CD2 A:HIS588 3.1 25.2 1.0 CE1 A:HIS588 3.1 27.9 1.0 O A:HOH1081 3.9 37.0 1.0 ND1 A:HIS588 4.2 25.9 1.0 O A:HOH1259 4.2 49.1 1.0 CG A:HIS588 4.2 27.4 1.0 O A:HOH1284 4.3 54.0 1.0 CG1 A:VAL591 4.6 36.3 1.0 O A:HOH1047 4.7 30.4 1.0 O A:HOH1139 5.0 36.4 1.0

R.Mir, R.Prem Kumar, M.Sinha, N.Singh, S.Sharma, P.Kaur, A.Bhushan, T.P.Singh. Structure of the Complex of Lactoferrin C-Lobe with Melibiose at 2.0 A Resolution To Be Published.