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Zinc in PDB 2dxr: Crystal Structure of the Complex Formed Between C-Terminal Half of Bovine Lactoferrin and Sorbitol at 2.85 A Resolution

Protein crystallography data

The structure of Crystal Structure of the Complex Formed Between C-Terminal Half of Bovine Lactoferrin and Sorbitol at 2.85 A Resolution, PDB code: 2dxr was solved by R.Mir, R.Prem Kumar, M.Sinha, N.Singh, S.Sharma, A.Bhushan, P.Kaur, T.P.Singh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.85
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 63.382, 50.391, 65.856, 90.00, 107.78, 90.00
R / Rfree (%) 19.8 / 22.7

Other elements in 2dxr:

The structure of Crystal Structure of the Complex Formed Between C-Terminal Half of Bovine Lactoferrin and Sorbitol at 2.85 A Resolution also contains other interesting chemical elements:

Iron (Fe) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of the Complex Formed Between C-Terminal Half of Bovine Lactoferrin and Sorbitol at 2.85 A Resolution (pdb code 2dxr). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of the Complex Formed Between C-Terminal Half of Bovine Lactoferrin and Sorbitol at 2.85 A Resolution, PDB code: 2dxr:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2dxr

Go back to Zinc Binding Sites List in 2dxr
Zinc binding site 1 out of 2 in the Crystal Structure of the Complex Formed Between C-Terminal Half of Bovine Lactoferrin and Sorbitol at 2.85 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Complex Formed Between C-Terminal Half of Bovine Lactoferrin and Sorbitol at 2.85 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1005

b:26.6
occ:1.00
O A:HOH1125 2.1 27.1 1.0
OE2 A:GLU659 2.1 16.9 1.0
OE1 A:GLU659 2.4 19.6 1.0
CD A:GLU659 2.6 16.7 1.0
CG A:GLU659 4.1 15.9 1.0
O A:GLY653 4.1 30.6 1.0
O A:ARG654 4.6 29.7 1.0
CA A:PRO655 4.6 25.9 1.0
O A:HOH1232 4.7 38.5 1.0
N A:THR656 4.8 22.6 1.0
CG2 A:THR656 4.9 22.4 1.0
CB A:GLU659 4.9 18.0 1.0

Zinc binding site 2 out of 2 in 2dxr

Go back to Zinc Binding Sites List in 2dxr
Zinc binding site 2 out of 2 in the Crystal Structure of the Complex Formed Between C-Terminal Half of Bovine Lactoferrin and Sorbitol at 2.85 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of the Complex Formed Between C-Terminal Half of Bovine Lactoferrin and Sorbitol at 2.85 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1006

b:21.1
occ:1.00
O A:HOH1242 2.0 15.6 1.0
O A:HOH1241 2.1 36.5 1.0
NE2 A:HIS588 2.3 17.9 1.0
O A:HOH1222 2.7 40.3 1.0
CD2 A:HIS588 3.2 18.9 1.0
CE1 A:HIS588 3.2 17.3 1.0
O A:HOH1213 3.9 40.2 1.0
ND1 A:HIS588 4.3 19.7 1.0
CG A:HIS588 4.4 18.8 1.0
CG1 A:VAL591 4.4 17.2 1.0

Reference:

R.Mir, R.Prem Kumar, M.Sinha, N.Singh, S.Sharma, A.Bhushan, P.Kaur, T.P.Singh. Crystal Structure of the Complex Formed Between C-Terminal Half of Bovine Lactoferrin and Sorbitol at 2.85 A Resolution To Be Published.
Page generated: Wed Dec 16 03:22:22 2020

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