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Zinc in PDB 2dwh: Crystal Structure of N-Acetylglucosamine Complex of Bovine Lactoferrin C-Lobe at 2.8 A Resolution

Protein crystallography data

The structure of Crystal Structure of N-Acetylglucosamine Complex of Bovine Lactoferrin C-Lobe at 2.8 A Resolution, PDB code: 2dwh was solved by R.Mir, A.S.Ethayathulla, N.Singh, S.Sharma, A.Bhushan, P.Kaur, T.P.Singh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.80
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 63.584, 50.488, 66.030, 90.00, 107.73, 90.00
R / Rfree (%) 19.4 / 22.8

Other elements in 2dwh:

The structure of Crystal Structure of N-Acetylglucosamine Complex of Bovine Lactoferrin C-Lobe at 2.8 A Resolution also contains other interesting chemical elements:

Iron (Fe) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of N-Acetylglucosamine Complex of Bovine Lactoferrin C-Lobe at 2.8 A Resolution (pdb code 2dwh). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of N-Acetylglucosamine Complex of Bovine Lactoferrin C-Lobe at 2.8 A Resolution, PDB code: 2dwh:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2dwh

Go back to Zinc Binding Sites List in 2dwh
Zinc binding site 1 out of 2 in the Crystal Structure of N-Acetylglucosamine Complex of Bovine Lactoferrin C-Lobe at 2.8 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of N-Acetylglucosamine Complex of Bovine Lactoferrin C-Lobe at 2.8 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn3

b:33.6
occ:1.00
OE2 A:GLU659 2.2 26.6 1.0
O A:HOH3148 2.4 52.0 1.0
OE1 A:GLU659 2.7 23.5 1.0
CD A:GLU659 2.8 24.6 1.0
O A:GLY653 4.0 41.9 1.0
CG A:GLU659 4.2 26.5 1.0
O A:ARG654 4.7 38.6 1.0
CA A:PRO655 4.7 36.1 1.0
CG2 A:THR656 4.9 32.5 1.0
N A:THR656 4.9 33.6 1.0

Zinc binding site 2 out of 2 in 2dwh

Go back to Zinc Binding Sites List in 2dwh
Zinc binding site 2 out of 2 in the Crystal Structure of N-Acetylglucosamine Complex of Bovine Lactoferrin C-Lobe at 2.8 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of N-Acetylglucosamine Complex of Bovine Lactoferrin C-Lobe at 2.8 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn4

b:40.8
occ:1.00
NE2 A:HIS588 2.3 26.7 1.0
O A:HOH3130 2.9 39.4 1.0
CD2 A:HIS588 3.2 29.1 1.0
CE1 A:HIS588 3.3 27.3 1.0
CG A:HIS588 4.4 30.2 1.0
ND1 A:HIS588 4.4 30.5 1.0

Reference:

R.Mir, A.S.Ethayathulla, N.Singh, S.Sharma, A.Bhushan, P.Kaur, T.P.Singh. Crystal Structure of N-Acetylglucosamine Complex of Bovine Lactoferrin C-Lobe at 2.8 A Resolution To Be Published.
Page generated: Wed Dec 16 03:22:19 2020

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