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Zinc in PDB 2dvc: Structure of the Bovine Lactoferrin C-Lobe Complex with Sucrose at 3.0 A Resolution

Protein crystallography data

The structure of Structure of the Bovine Lactoferrin C-Lobe Complex with Sucrose at 3.0 A Resolution, PDB code: 2dvc was solved by R.Mir, R.Prem Kumar, R.Bhardwaj, A.S.Ethayathulla, M.Sinha, N.Singh, A.Bhushan, S.Sharma, P.Kaur, T.P.Singh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.84 / 3.00
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 63.457, 50.398, 65.915, 90.00, 107.79, 90.00
R / Rfree (%) 18 / 21.8

Other elements in 2dvc:

The structure of Structure of the Bovine Lactoferrin C-Lobe Complex with Sucrose at 3.0 A Resolution also contains other interesting chemical elements:

Iron (Fe) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of the Bovine Lactoferrin C-Lobe Complex with Sucrose at 3.0 A Resolution (pdb code 2dvc). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of the Bovine Lactoferrin C-Lobe Complex with Sucrose at 3.0 A Resolution, PDB code: 2dvc:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2dvc

Go back to Zinc Binding Sites List in 2dvc
Zinc binding site 1 out of 2 in the Structure of the Bovine Lactoferrin C-Lobe Complex with Sucrose at 3.0 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the Bovine Lactoferrin C-Lobe Complex with Sucrose at 3.0 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1004

b:29.9
occ:1.00
OE2 A:GLU659 2.2 19.6 1.0
OE1 A:GLU659 2.3 17.1 1.0
O A:HOH1120 2.3 25.5 1.0
CD A:GLU659 2.6 18.6 1.0
CG A:GLU659 4.0 19.5 1.0
O A:GLY653 4.1 32.2 1.0
O A:ARG654 4.4 25.6 1.0
CA A:PRO655 4.7 21.9 1.0
CG2 A:THR656 4.8 18.6 1.0
CB A:GLU659 4.8 21.0 1.0
N A:THR656 4.9 19.5 1.0

Zinc binding site 2 out of 2 in 2dvc

Go back to Zinc Binding Sites List in 2dvc
Zinc binding site 2 out of 2 in the Structure of the Bovine Lactoferrin C-Lobe Complex with Sucrose at 3.0 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of the Bovine Lactoferrin C-Lobe Complex with Sucrose at 3.0 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1005

b:30.6
occ:1.00
NE2 A:HIS588 2.1 19.9 1.0
O A:HOH1117 2.2 64.8 1.0
O A:HOH1118 2.2 35.8 1.0
O A:HOH1119 2.4 18.3 1.0
CE1 A:HIS588 3.0 21.1 1.0
CD2 A:HIS588 3.1 21.2 1.0
ND1 A:HIS588 4.2 21.9 1.0
CG A:HIS588 4.3 20.4 1.0
CG1 A:VAL591 4.5 18.6 1.0

Reference:

R.Mir, R.Prem Kumar, R.Bhardwaj, A.S.Ethayathulla, M.Sinha, N.Singh, A.Bhushan, S.Sharma, P.Kaur, T.P.Singh. Structure of the Bovine Lactoferrin C-Lobe Complex with Sucrose at 3.0 A Resolution To Be Published.
Page generated: Wed Dec 16 03:22:17 2020

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