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Zinc in PDB 2dsf: Structure of the Complex of C-Terminal Lobe of Bovine Lactoferrin with Xylose at 2.8A Resolution

Protein crystallography data

The structure of Structure of the Complex of C-Terminal Lobe of Bovine Lactoferrin with Xylose at 2.8A Resolution, PDB code: 2dsf was solved by R.Mir, N.Singh, M.Sinha, S.Sharma, A.Bhushan, T.P.Singh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.94 / 2.80
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 63.450, 50.440, 65.870, 90.00, 107.80, 90.00
R / Rfree (%) 20.1 / 23.1

Other elements in 2dsf:

The structure of Structure of the Complex of C-Terminal Lobe of Bovine Lactoferrin with Xylose at 2.8A Resolution also contains other interesting chemical elements:

Iron (Fe) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of the Complex of C-Terminal Lobe of Bovine Lactoferrin with Xylose at 2.8A Resolution (pdb code 2dsf). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of the Complex of C-Terminal Lobe of Bovine Lactoferrin with Xylose at 2.8A Resolution, PDB code: 2dsf:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2dsf

Go back to Zinc Binding Sites List in 2dsf
Zinc binding site 1 out of 2 in the Structure of the Complex of C-Terminal Lobe of Bovine Lactoferrin with Xylose at 2.8A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the Complex of C-Terminal Lobe of Bovine Lactoferrin with Xylose at 2.8A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1101

b:19.3
occ:1.00
OE2 A:GLU659 2.2 11.6 1.0
O A:HOH4062 2.2 44.1 1.0
CD A:GLU659 2.8 12.3 1.0
OE1 A:GLU659 2.9 9.6 1.0
O A:HOH4096 4.1 54.8 1.0
O A:GLY653 4.2 27.4 1.0
CG A:GLU659 4.3 12.8 1.0
O A:ARG654 4.6 25.6 1.0
CG2 A:THR656 4.7 18.5 1.0

Zinc binding site 2 out of 2 in 2dsf

Go back to Zinc Binding Sites List in 2dsf
Zinc binding site 2 out of 2 in the Structure of the Complex of C-Terminal Lobe of Bovine Lactoferrin with Xylose at 2.8A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of the Complex of C-Terminal Lobe of Bovine Lactoferrin with Xylose at 2.8A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1102

b:41.2
occ:1.00
O A:HOH4063 2.2 47.8 1.0
NE2 A:HIS588 2.3 21.3 1.0
CD2 A:HIS588 3.1 23.0 1.0
O A:HOH4087 3.4 32.8 1.0
CE1 A:HIS588 3.4 21.1 1.0
CG A:HIS588 4.3 21.2 1.0
O A:HOH4057 4.4 16.5 1.0
ND1 A:HIS588 4.4 21.4 1.0
CG1 A:VAL591 4.7 22.4 1.0
O A:HOH4010 4.9 27.6 1.0

Reference:

R.Mir, N.Singh, M.Sinha, S.Sharma, A.Bhushan, T.P.Singh. Structure of the Complex of C-Terminal Lobe of Bovine Lactoferrin with Xylose at 2.8A Resolution To Be Published.
Page generated: Wed Dec 16 03:22:16 2020

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