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Zinc in PDB 2ds9: Structure of the Complex of C-Terminal Lobe of Bovine Lactoferrin with Mannose at 2.8 A Resolution

Protein crystallography data

The structure of Structure of the Complex of C-Terminal Lobe of Bovine Lactoferrin with Mannose at 2.8 A Resolution, PDB code: 2ds9 was solved by R.Mir, N.Singh, M.Sinha, S.Sharma, A.Bhushan, T.P.Singh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 2.80
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 63.818, 50.387, 65.982, 90.00, 108.08, 90.00
R / Rfree (%) 19.6 / 22.8

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of the Complex of C-Terminal Lobe of Bovine Lactoferrin with Mannose at 2.8 A Resolution (pdb code 2ds9). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of the Complex of C-Terminal Lobe of Bovine Lactoferrin with Mannose at 2.8 A Resolution, PDB code: 2ds9:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2ds9

Go back to Zinc Binding Sites List in 2ds9
Zinc binding site 1 out of 2 in the Structure of the Complex of C-Terminal Lobe of Bovine Lactoferrin with Mannose at 2.8 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the Complex of C-Terminal Lobe of Bovine Lactoferrin with Mannose at 2.8 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1101

b:30.6
occ:1.00
OE2 A:GLU659 1.8 15.1 1.0
O A:HOH1742 2.2 46.5 1.0
CD A:GLU659 2.7 16.5 1.0
OE1 A:GLU659 2.9 14.6 1.0
CG A:GLU659 4.0 17.7 1.0
O A:GLY653 4.4 26.8 1.0
O A:ARG654 4.5 26.0 1.0

Zinc binding site 2 out of 2 in 2ds9

Go back to Zinc Binding Sites List in 2ds9
Zinc binding site 2 out of 2 in the Structure of the Complex of C-Terminal Lobe of Bovine Lactoferrin with Mannose at 2.8 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of the Complex of C-Terminal Lobe of Bovine Lactoferrin with Mannose at 2.8 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1102

b:37.2
occ:1.00
O A:HOH1851 1.7 43.6 1.0
O A:HOH1858 1.8 53.8 1.0
NE2 A:HIS588 1.9 22.6 1.0
CE1 A:HIS588 2.8 22.9 1.0
CD2 A:HIS588 3.0 23.3 1.0
O A:HOH1803 3.8 45.4 1.0
ND1 A:HIS588 4.0 24.1 1.0
CG A:HIS588 4.1 23.6 1.0
O A:HOH1723 4.5 54.9 1.0
CG1 A:VAL591 4.6 17.2 1.0

Reference:

R.Mir, N.Singh, M.Sinha, S.Sharma, A.Bhushan, T.P.Singh. Structure of the Complex of C-Terminal Lobe of Bovine Lactoferrin with Mannose at 2.8 A Resolution To Be Published.
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