Zinc in PDB 2dmd: Solution Structure of the N-Terminal C2H2 Type Zinc-Binding Domain of the Zinc Finger Protein 64, Isoforms 1 and 2

The binding sites of Zinc atom in the Solution Structure of the N-Terminal C2H2 Type Zinc-Binding Domain of the Zinc Finger Protein 64, Isoforms 1 and 2 (pdb code 2dmd). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Solution Structure of the N-Terminal C2H2 Type Zinc-Binding Domain of the Zinc Finger Protein 64, Isoforms 1 and 2, PDB code: 2dmd:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in the Solution Structure of the N-Terminal C2H2 Type Zinc-Binding Domain of the Zinc Finger Protein 64, Isoforms 1 and 2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the N-Terminal C2H2 Type Zinc-Binding Domain of the Zinc Finger Protein 64, Isoforms 1 and 2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn191 b:0.0 occ:1.00 NE2 A:HIS31 2.0 0.0 1.0 NE2 A:HIS27 2.1 0.0 1.0 SG A:CYS14 2.2 0.0 1.0 SG A:CYS11 2.4 0.0 1.0 CD2 A:HIS27 2.7 0.0 1.0 HD2 A:HIS27 2.7 0.0 1.0 CD2 A:HIS31 2.8 0.0 1.0 HG22 A:VAL13 2.9 0.0 1.0 HD2 A:HIS31 3.0 0.0 1.0 CE1 A:HIS31 3.1 0.0 1.0 HB3 A:CYS11 3.2 0.0 1.0 CE1 A:HIS27 3.3 0.0 1.0 HB3 A:CYS14 3.3 0.0 1.0 CB A:CYS11 3.4 0.0 1.0 CB A:CYS14 3.5 0.0 1.0 HE1 A:HIS31 3.5 0.0 1.0 CG2 A:VAL13 3.7 0.0 1.0 HG21 A:VAL13 3.7 0.0 1.0 HE1 A:HIS27 3.7 0.0 1.0 HG23 A:VAL13 3.8 0.0 1.0 H A:CYS14 3.8 0.0 1.0 HB2 A:LYS16 3.9 0.0 1.0 HB2 A:CYS11 3.9 0.0 1.0 CG A:HIS27 4.0 0.0 1.0 HB3 A:LYS16 4.0 0.0 1.0 CG A:HIS31 4.1 0.0 1.0 HB2 A:CYS14 4.1 0.0 1.0 ND1 A:HIS31 4.2 0.0 1.0 ND1 A:HIS27 4.2 0.0 1.0 O A:CYS11 4.3 0.0 1.0 N A:CYS14 4.4 0.0 1.0 H A:LYS16 4.4 0.0 1.0 H A:GLY15 4.4 0.0 1.0 HE1 A:MET28 4.4 0.0 1.0 CB A:LYS16 4.5 0.0 1.0 CA A:CYS14 4.5 0.0 1.0 HE2 A:PHE18 4.6 0.0 1.0 CA A:CYS11 4.7 0.0 1.0 HE2 A:MET28 4.9 0.0 1.0 C A:CYS11 5.0 0.0 1.0 HA A:CYS11 5.0 0.0 1.0

Zinc binding site 2 out of 3 in the Solution Structure of the N-Terminal C2H2 Type Zinc-Binding Domain of the Zinc Finger Protein 64, Isoforms 1 and 2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the N-Terminal C2H2 Type Zinc-Binding Domain of the Zinc Finger Protein 64, Isoforms 1 and 2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn241 b:0.0 occ:1.00 NE2 A:HIS59 2.0 0.0 1.0 NE2 A:HIS55 2.0 0.0 1.0 SG A:CYS39 2.2 0.0 1.0 SG A:CYS42 2.4 0.0 1.0 CE1 A:HIS59 2.7 0.0 1.0 CD2 A:HIS55 2.8 0.0 1.0 HE1 A:HIS59 2.8 0.0 1.0 HB2 A:CYS42 2.9 0.0 1.0 HD2 A:HIS55 2.9 0.0 1.0 CE1 A:HIS55 3.1 0.0 1.0 CD2 A:HIS59 3.1 0.0 1.0 CB A:CYS42 3.3 0.0 1.0 HB2 A:CYS39 3.4 0.0 1.0 CB A:CYS39 3.4 0.0 1.0 H A:CYS42 3.5 0.0 1.0 HE1 A:HIS55 3.5 0.0 1.0 HD2 A:HIS59 3.5 0.0 1.0 HG23 A:THR41 3.8 0.0 1.0 HB3 A:CYS39 3.8 0.0 1.0 ND1 A:HIS59 3.8 0.0 1.0 HB3 A:CYS42 3.9 0.0 1.0 CG A:HIS55 3.9 0.0 1.0 HD13 A:ILE58 4.0 0.0 1.0 CG A:HIS59 4.0 0.0 1.0 ND1 A:HIS55 4.1 0.0 1.0 HG22 A:THR41 4.1 0.0 1.0 N A:CYS42 4.2 0.0 1.0 CA A:CYS42 4.4 0.0 1.0 CG2 A:THR41 4.4 0.0 1.0 HD11 A:ILE58 4.4 0.0 1.0 H A:THR41 4.5 0.0 1.0 HD1 A:HIS59 4.6 0.0 1.0 CD1 A:ILE58 4.7 0.0 1.0 O A:HIS55 4.7 0.0 1.0 H A:LYS40 4.7 0.0 1.0 HG21 A:THR41 4.8 0.0 1.0 HD23 A:LEU56 4.8 0.0 1.0 HA A:LEU56 4.8 0.0 1.0 HG12 A:ILE58 4.8 0.0 1.0 CA A:CYS39 4.8 0.0 1.0 HB3 A:TYR44 4.8 0.0 1.0 HA A:CYS39 4.9 0.0 1.0 HD1 A:HIS55 5.0 0.0 1.0

Zinc binding site 3 out of 3 in the Solution Structure of the N-Terminal C2H2 Type Zinc-Binding Domain of the Zinc Finger Protein 64, Isoforms 1 and 2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Solution Structure of the N-Terminal C2H2 Type Zinc-Binding Domain of the Zinc Finger Protein 64, Isoforms 1 and 2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn291 b:0.0 occ:1.00 NE2 A:HIS87 2.0 0.0 1.0 NE2 A:HIS83 2.1 0.0 1.0 SG A:CYS70 2.2 0.0 1.0 SG A:CYS67 2.4 0.0 1.0 CE1 A:HIS83 2.7 0.0 1.0 HE1 A:HIS83 2.7 0.0 1.0 CE1 A:HIS87 2.8 0.0 1.0 H A:CYS70 2.9 0.0 1.0 HE1 A:HIS87 3.0 0.0 1.0 CD2 A:HIS87 3.1 0.0 1.0 HB A:ILE69 3.3 0.0 1.0 CD2 A:HIS83 3.3 0.0 1.0 HB3 A:CYS67 3.3 0.0 1.0 CB A:CYS67 3.3 0.0 1.0 HD2 A:HIS87 3.4 0.0 1.0 HB2 A:CYS67 3.5 0.0 1.0 CB A:CYS70 3.5 0.0 1.0 HB3 A:CYS70 3.6 0.0 1.0 N A:CYS70 3.7 0.0 1.0 HB3 A:TYR72 3.7 0.0 1.0 HD2 A:HIS83 3.8 0.0 1.0 HD13 A:ILE69 3.8 0.0 1.0 ND1 A:HIS83 4.0 0.0 1.0 ND1 A:HIS87 4.0 0.0 1.0 HD23 A:LEU84 4.1 0.0 1.0 CA A:CYS70 4.1 0.0 1.0 CG A:HIS87 4.1 0.0 1.0 CG A:HIS83 4.3 0.0 1.0 HA A:LEU84 4.3 0.0 1.0 CB A:ILE69 4.3 0.0 1.0 HB2 A:CYS70 4.4 0.0 1.0 O A:CYS70 4.4 0.0 1.0 H A:ILE69 4.6 0.0 1.0 HB2 A:TYR72 4.6 0.0 1.0 C A:CYS70 4.6 0.0 1.0 CB A:TYR72 4.7 0.0 1.0 C A:ILE69 4.7 0.0 1.0 HD1 A:HIS83 4.8 0.0 1.0 HG23 A:ILE69 4.8 0.0 1.0 CA A:CYS67 4.8 0.0 1.0 H A:TYR72 4.8 0.0 1.0 HD1 A:HIS87 4.8 0.0 1.0 CD1 A:ILE69 4.8 0.0 1.0 N A:ILE69 4.9 0.0 1.0 H A:GLN68 4.9 0.0 1.0 CA A:ILE69 4.9 0.0 1.0 HD2 A:TYR72 4.9 0.0 1.0

M.Yoneyama, N.Tochio, S.Koshiba, M.Inoue, T.Kigawa, S.Yokoyama. Solution Structure of the N-Terminal C2H2 Type Zinc-Binding Domain of the Zinc Finger Protein 64, Isoforms 1 and 2 To Be Published.