Zinc in PDB 2dlq: Solution Structure of the Tandem Four Zf-C2H2 Domain Repeats of Murine Gli-Kruppel Family Member HKR3

The binding sites of Zinc atom in the Solution Structure of the Tandem Four Zf-C2H2 Domain Repeats of Murine Gli-Kruppel Family Member HKR3 (pdb code 2dlq). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Solution Structure of the Tandem Four Zf-C2H2 Domain Repeats of Murine Gli-Kruppel Family Member HKR3, PDB code: 2dlq:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the Solution Structure of the Tandem Four Zf-C2H2 Domain Repeats of Murine Gli-Kruppel Family Member HKR3


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the Tandem Four Zf-C2H2 Domain Repeats of Murine Gli-Kruppel Family Member HKR3 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn200 b:0.0 occ:1.00 NE2 A:HIS30 2.0 0.0 1.0 NE2 A:HIS26 2.1 0.0 1.0 SG A:CYS13 2.4 0.0 1.0 SG A:CYS10 2.4 0.0 1.0 CD2 A:HIS30 2.7 0.0 1.0 HD2 A:HIS30 2.8 0.0 1.0 H A:CYS13 3.0 0.0 1.0 CD2 A:HIS26 3.0 0.0 1.0 CE1 A:HIS26 3.1 0.0 1.0 HB3 A:CYS10 3.1 0.0 1.0 HB3 A:CYS13 3.2 0.0 1.0 HD2 A:HIS26 3.2 0.0 1.0 CE1 A:HIS30 3.2 0.0 1.0 CB A:CYS10 3.2 0.0 1.0 HB A:THR12 3.3 0.0 1.0 HE1 A:HIS26 3.3 0.0 1.0 CB A:CYS13 3.4 0.0 1.0 HB2 A:CYS10 3.4 0.0 1.0 HE1 A:HIS30 3.6 0.0 1.0 N A:CYS13 3.8 0.0 1.0 CG A:HIS30 4.0 0.0 1.0 HB3 A:LYS15 4.1 0.0 1.0 HA A:ASN27 4.1 0.0 1.0 ND1 A:HIS26 4.2 0.0 1.0 CA A:CYS13 4.2 0.0 1.0 CG A:HIS26 4.2 0.0 1.0 ND1 A:HIS30 4.2 0.0 1.0 HB2 A:CYS13 4.2 0.0 1.0 CB A:THR12 4.3 0.0 1.0 H A:LYS15 4.4 0.0 1.0 H A:THR12 4.4 0.0 1.0 H A:HIS14 4.5 0.0 1.0 HB2 A:LYS15 4.6 0.0 1.0 HG23 A:THR12 4.6 0.0 1.0 HE1 A:PHE17 4.7 0.0 1.0 CA A:CYS10 4.7 0.0 1.0 HG1 A:THR12 4.7 0.0 1.0 C A:THR12 4.8 0.0 1.0 CB A:LYS15 4.9 0.0 1.0 CG2 A:THR12 4.9 0.0 1.0 C A:CYS13 4.9 0.0 1.0 N A:HIS14 5.0 0.0 1.0

Zinc binding site 2 out of 4 in the Solution Structure of the Tandem Four Zf-C2H2 Domain Repeats of Murine Gli-Kruppel Family Member HKR3


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the Tandem Four Zf-C2H2 Domain Repeats of Murine Gli-Kruppel Family Member HKR3 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn300 b:0.0 occ:1.00 SG A:CYS59 2.1 0.0 1.0 NE2 A:HIS54 2.1 0.0 1.0 SG A:CYS38 2.4 0.0 1.0 SG A:CYS41 2.4 0.0 1.0 CD2 A:HIS54 3.0 0.0 1.0 HB3 A:CYS41 3.1 0.0 1.0 HB3 A:CYS38 3.1 0.0 1.0 CE1 A:HIS54 3.1 0.0 1.0 HD2 A:HIS54 3.1 0.0 1.0 HA A:CYS59 3.2 0.0 1.0 CB A:CYS38 3.2 0.0 1.0 H A:CYS41 3.3 0.0 1.0 CB A:CYS41 3.3 0.0 1.0 CB A:CYS59 3.4 0.0 1.0 HB2 A:CYS38 3.4 0.0 1.0 HE1 A:HIS54 3.4 0.0 1.0 H A:MET60 3.4 0.0 1.0 HB2 A:LYS40 3.4 0.0 1.0 HB2 A:CYS59 3.6 0.0 1.0 HA A:GLU55 3.8 0.0 1.0 OE1 A:GLU55 3.8 0.0 1.0 CA A:CYS59 3.8 0.0 1.0 N A:CYS41 3.9 0.0 1.0 H A:GLY42 4.0 0.0 1.0 HG2 A:GLU55 4.1 0.0 1.0 HB2 A:LYS43 4.1 0.0 1.0 CG A:HIS54 4.1 0.0 1.0 HB2 A:CYS41 4.2 0.0 1.0 ND1 A:HIS54 4.2 0.0 1.0 CA A:CYS41 4.2 0.0 1.0 HB3 A:CYS59 4.3 0.0 1.0 N A:MET60 4.3 0.0 1.0 H A:LYS43 4.4 0.0 1.0 CB A:LYS40 4.4 0.0 1.0 O A:ASN58 4.4 0.0 1.0 H A:LYS40 4.5 0.0 1.0 CD A:GLU55 4.5 0.0 1.0 HB3 A:LYS40 4.6 0.0 1.0 C A:CYS59 4.6 0.0 1.0 HB3 A:LYS43 4.7 0.0 1.0 CA A:CYS38 4.7 0.0 1.0 CA A:GLU55 4.8 0.0 1.0 C A:LYS40 4.8 0.0 1.0 CG A:GLU55 4.8 0.0 1.0 N A:GLY42 4.8 0.0 1.0 HB2 A:MET60 4.8 0.0 1.0 CB A:LYS43 4.9 0.0 1.0 N A:CYS59 4.9 0.0 1.0

Zinc binding site 3 out of 4 in the Solution Structure of the Tandem Four Zf-C2H2 Domain Repeats of Murine Gli-Kruppel Family Member HKR3


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Solution Structure of the Tandem Four Zf-C2H2 Domain Repeats of Murine Gli-Kruppel Family Member HKR3 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn400 b:0.0 occ:1.00 NE2 A:HIS89 2.1 0.0 1.0 NE2 A:HIS85 2.1 0.0 1.0 SG A:CYS72 2.2 0.0 1.0 SG A:CYS69 2.4 0.0 1.0 CD2 A:HIS89 2.8 0.0 1.0 CD2 A:HIS85 2.9 0.0 1.0 HD2 A:HIS89 2.9 0.0 1.0 H A:CYS72 3.0 0.0 1.0 HD2 A:HIS85 3.0 0.0 1.0 CE1 A:HIS85 3.2 0.0 1.0 CE1 A:HIS89 3.2 0.0 1.0 HB2 A:GLU74 3.3 0.0 1.0 CB A:CYS69 3.4 0.0 1.0 HB A:VAL71 3.4 0.0 1.0 HB2 A:CYS69 3.4 0.0 1.0 HB3 A:CYS69 3.5 0.0 1.0 HE1 A:HIS85 3.5 0.0 1.0 CB A:CYS72 3.6 0.0 1.0 HE1 A:HIS89 3.6 0.0 1.0 HB3 A:CYS72 3.6 0.0 1.0 HE1 A:MET86 3.7 0.0 1.0 N A:CYS72 3.8 0.0 1.0 H A:GLU74 3.9 0.0 1.0 HZ A:PHE76 4.0 0.0 1.0 H A:VAL71 4.0 0.0 1.0 CG A:HIS89 4.1 0.0 1.0 CG A:HIS85 4.1 0.0 1.0 ND1 A:HIS89 4.2 0.0 1.0 CA A:CYS72 4.2 0.0 1.0 ND1 A:HIS85 4.2 0.0 1.0 CB A:GLU74 4.3 0.0 1.0 HE2 A:MET86 4.4 0.0 1.0 H A:GLN73 4.4 0.0 1.0 HB2 A:CYS72 4.4 0.0 1.0 CB A:VAL71 4.5 0.0 1.0 CE A:MET86 4.5 0.0 1.0 H A:SER70 4.6 0.0 1.0 HB3 A:GLU74 4.6 0.0 1.0 HG2 A:GLU74 4.6 0.0 1.0 HA A:MET86 4.6 0.0 1.0 HE1 A:PHE76 4.8 0.0 1.0 C A:VAL71 4.8 0.0 1.0 N A:GLU74 4.8 0.0 1.0 HG11 A:VAL71 4.8 0.0 1.0 C A:CYS72 4.8 0.0 1.0 N A:VAL71 4.8 0.0 1.0 N A:GLN73 4.8 0.0 1.0 CA A:CYS69 4.8 0.0 1.0 HG23 A:VAL71 4.9 0.0 1.0 CA A:VAL71 4.9 0.0 1.0 CZ A:PHE76 5.0 0.0 1.0 HE3 A:MET86 5.0 0.0 1.0

Zinc binding site 4 out of 4 in the Solution Structure of the Tandem Four Zf-C2H2 Domain Repeats of Murine Gli-Kruppel Family Member HKR3


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Solution Structure of the Tandem Four Zf-C2H2 Domain Repeats of Murine Gli-Kruppel Family Member HKR3 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn500 b:0.0 occ:1.00 NE2 A:HIS113 2.1 0.0 1.0 NE2 A:HIS118 2.1 0.0 1.0 SG A:CYS100 2.3 0.0 1.0 SG A:CYS97 2.4 0.0 1.0 CD2 A:HIS118 2.8 0.0 1.0 HD2 A:HIS118 2.9 0.0 1.0 CD2 A:HIS113 3.0 0.0 1.0 CE1 A:HIS113 3.1 0.0 1.0 H A:CYS100 3.2 0.0 1.0 CE1 A:HIS118 3.2 0.0 1.0 HD2 A:HIS113 3.2 0.0 1.0 CB A:CYS97 3.3 0.0 1.0 HE1 A:HIS113 3.3 0.0 1.0 HB3 A:CYS97 3.3 0.0 1.0 HB2 A:CYS97 3.4 0.0 1.0 HB3 A:CYS100 3.4 0.0 1.0 HG2 A:MET114 3.4 0.0 1.0 HB2 A:GLN102 3.4 0.0 1.0 CB A:CYS100 3.5 0.0 1.0 HE1 A:HIS118 3.6 0.0 1.0 HG3 A:GLN102 3.7 0.0 1.0 H A:GLN102 3.8 0.0 1.0 N A:CYS100 4.0 0.0 1.0 HB2 A:SER99 4.0 0.0 1.0 HE3 A:MET114 4.0 0.0 1.0 CG A:HIS118 4.0 0.0 1.0 ND1 A:HIS113 4.1 0.0 1.0 CG A:HIS113 4.2 0.0 1.0 H A:SER101 4.2 0.0 1.0 ND1 A:HIS118 4.2 0.0 1.0 CA A:CYS100 4.3 0.0 1.0 HZ A:PHE104 4.3 0.0 1.0 HB2 A:CYS100 4.4 0.0 1.0 CB A:GLN102 4.4 0.0 1.0 CG A:GLN102 4.4 0.0 1.0 H A:SER98 4.4 0.0 1.0 HE2 A:MET114 4.5 0.0 1.0 CG A:MET114 4.5 0.0 1.0 H A:SER99 4.5 0.0 1.0 HA A:MET114 4.5 0.0 1.0 HG2 A:GLN102 4.5 0.0 1.0 CE A:MET114 4.6 0.0 1.0 HE1 A:PHE104 4.7 0.0 1.0 N A:SER101 4.7 0.0 1.0 CA A:CYS97 4.8 0.0 1.0 N A:GLN102 4.8 0.0 1.0 HB2 A:LEU117 4.8 0.0 1.0 CB A:SER99 4.8 0.0 1.0 HB3 A:SER99 4.9 0.0 1.0 HD12 A:LEU117 4.9 0.0 1.0 C A:CYS100 4.9 0.0 1.0 HG3 A:MET114 5.0 0.0 1.0 HD11 A:LEU110 5.0 0.0 1.0 SD A:MET114 5.0 0.0 1.0 HA A:CYS97 5.0 0.0 1.0

K.Inoue, F.Hayashi, K.Izumi, M.Yoshida, S.Yokoyama. Solution Structure of the Tandem Four Zf-C2H2 Domain Repeats of Murine Gli-Kruppel Family Member HKR3 To Be Published.