Atomistry » Zinc » PDB 2dar-2dqm » 2dlq
Atomistry »
  Zinc »
    PDB 2dar-2dqm »
      2dlq »

Zinc in PDB 2dlq: Solution Structure of the Tandem Four Zf-C2H2 Domain Repeats of Murine Gli-Kruppel Family Member HKR3

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution Structure of the Tandem Four Zf-C2H2 Domain Repeats of Murine Gli-Kruppel Family Member HKR3 (pdb code 2dlq). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Solution Structure of the Tandem Four Zf-C2H2 Domain Repeats of Murine Gli-Kruppel Family Member HKR3, PDB code: 2dlq:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 2dlq

Go back to Zinc Binding Sites List in 2dlq
Zinc binding site 1 out of 4 in the Solution Structure of the Tandem Four Zf-C2H2 Domain Repeats of Murine Gli-Kruppel Family Member HKR3


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the Tandem Four Zf-C2H2 Domain Repeats of Murine Gli-Kruppel Family Member HKR3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn200

b:0.0
occ:1.00
NE2 A:HIS30 2.0 0.0 1.0
NE2 A:HIS26 2.1 0.0 1.0
SG A:CYS13 2.4 0.0 1.0
SG A:CYS10 2.4 0.0 1.0
CD2 A:HIS30 2.7 0.0 1.0
HD2 A:HIS30 2.8 0.0 1.0
H A:CYS13 3.0 0.0 1.0
CD2 A:HIS26 3.0 0.0 1.0
CE1 A:HIS26 3.1 0.0 1.0
HB3 A:CYS10 3.1 0.0 1.0
HB3 A:CYS13 3.2 0.0 1.0
HD2 A:HIS26 3.2 0.0 1.0
CE1 A:HIS30 3.2 0.0 1.0
CB A:CYS10 3.2 0.0 1.0
HB A:THR12 3.3 0.0 1.0
HE1 A:HIS26 3.3 0.0 1.0
CB A:CYS13 3.4 0.0 1.0
HB2 A:CYS10 3.4 0.0 1.0
HE1 A:HIS30 3.6 0.0 1.0
N A:CYS13 3.8 0.0 1.0
CG A:HIS30 4.0 0.0 1.0
HB3 A:LYS15 4.1 0.0 1.0
HA A:ASN27 4.1 0.0 1.0
ND1 A:HIS26 4.2 0.0 1.0
CA A:CYS13 4.2 0.0 1.0
CG A:HIS26 4.2 0.0 1.0
ND1 A:HIS30 4.2 0.0 1.0
HB2 A:CYS13 4.2 0.0 1.0
CB A:THR12 4.3 0.0 1.0
H A:LYS15 4.4 0.0 1.0
H A:THR12 4.4 0.0 1.0
H A:HIS14 4.5 0.0 1.0
HB2 A:LYS15 4.6 0.0 1.0
HG23 A:THR12 4.6 0.0 1.0
HE1 A:PHE17 4.7 0.0 1.0
CA A:CYS10 4.7 0.0 1.0
HG1 A:THR12 4.7 0.0 1.0
C A:THR12 4.8 0.0 1.0
CB A:LYS15 4.9 0.0 1.0
CG2 A:THR12 4.9 0.0 1.0
C A:CYS13 4.9 0.0 1.0
N A:HIS14 5.0 0.0 1.0

Zinc binding site 2 out of 4 in 2dlq

Go back to Zinc Binding Sites List in 2dlq
Zinc binding site 2 out of 4 in the Solution Structure of the Tandem Four Zf-C2H2 Domain Repeats of Murine Gli-Kruppel Family Member HKR3


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the Tandem Four Zf-C2H2 Domain Repeats of Murine Gli-Kruppel Family Member HKR3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn300

b:0.0
occ:1.00
SG A:CYS59 2.1 0.0 1.0
NE2 A:HIS54 2.1 0.0 1.0
SG A:CYS38 2.4 0.0 1.0
SG A:CYS41 2.4 0.0 1.0
CD2 A:HIS54 3.0 0.0 1.0
HB3 A:CYS41 3.1 0.0 1.0
HB3 A:CYS38 3.1 0.0 1.0
CE1 A:HIS54 3.1 0.0 1.0
HD2 A:HIS54 3.1 0.0 1.0
HA A:CYS59 3.2 0.0 1.0
CB A:CYS38 3.2 0.0 1.0
H A:CYS41 3.3 0.0 1.0
CB A:CYS41 3.3 0.0 1.0
CB A:CYS59 3.4 0.0 1.0
HB2 A:CYS38 3.4 0.0 1.0
HE1 A:HIS54 3.4 0.0 1.0
H A:MET60 3.4 0.0 1.0
HB2 A:LYS40 3.4 0.0 1.0
HB2 A:CYS59 3.6 0.0 1.0
HA A:GLU55 3.8 0.0 1.0
OE1 A:GLU55 3.8 0.0 1.0
CA A:CYS59 3.8 0.0 1.0
N A:CYS41 3.9 0.0 1.0
H A:GLY42 4.0 0.0 1.0
HG2 A:GLU55 4.1 0.0 1.0
HB2 A:LYS43 4.1 0.0 1.0
CG A:HIS54 4.1 0.0 1.0
HB2 A:CYS41 4.2 0.0 1.0
ND1 A:HIS54 4.2 0.0 1.0
CA A:CYS41 4.2 0.0 1.0
HB3 A:CYS59 4.3 0.0 1.0
N A:MET60 4.3 0.0 1.0
H A:LYS43 4.4 0.0 1.0
CB A:LYS40 4.4 0.0 1.0
O A:ASN58 4.4 0.0 1.0
H A:LYS40 4.5 0.0 1.0
CD A:GLU55 4.5 0.0 1.0
HB3 A:LYS40 4.6 0.0 1.0
C A:CYS59 4.6 0.0 1.0
HB3 A:LYS43 4.7 0.0 1.0
CA A:CYS38 4.7 0.0 1.0
CA A:GLU55 4.8 0.0 1.0
C A:LYS40 4.8 0.0 1.0
CG A:GLU55 4.8 0.0 1.0
N A:GLY42 4.8 0.0 1.0
HB2 A:MET60 4.8 0.0 1.0
CB A:LYS43 4.9 0.0 1.0
N A:CYS59 4.9 0.0 1.0

Zinc binding site 3 out of 4 in 2dlq

Go back to Zinc Binding Sites List in 2dlq
Zinc binding site 3 out of 4 in the Solution Structure of the Tandem Four Zf-C2H2 Domain Repeats of Murine Gli-Kruppel Family Member HKR3


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Solution Structure of the Tandem Four Zf-C2H2 Domain Repeats of Murine Gli-Kruppel Family Member HKR3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn400

b:0.0
occ:1.00
NE2 A:HIS89 2.1 0.0 1.0
NE2 A:HIS85 2.1 0.0 1.0
SG A:CYS72 2.2 0.0 1.0
SG A:CYS69 2.4 0.0 1.0
CD2 A:HIS89 2.8 0.0 1.0
CD2 A:HIS85 2.9 0.0 1.0
HD2 A:HIS89 2.9 0.0 1.0
H A:CYS72 3.0 0.0 1.0
HD2 A:HIS85 3.0 0.0 1.0
CE1 A:HIS85 3.2 0.0 1.0
CE1 A:HIS89 3.2 0.0 1.0
HB2 A:GLU74 3.3 0.0 1.0
CB A:CYS69 3.4 0.0 1.0
HB A:VAL71 3.4 0.0 1.0
HB2 A:CYS69 3.4 0.0 1.0
HB3 A:CYS69 3.5 0.0 1.0
HE1 A:HIS85 3.5 0.0 1.0
CB A:CYS72 3.6 0.0 1.0
HE1 A:HIS89 3.6 0.0 1.0
HB3 A:CYS72 3.6 0.0 1.0
HE1 A:MET86 3.7 0.0 1.0
N A:CYS72 3.8 0.0 1.0
H A:GLU74 3.9 0.0 1.0
HZ A:PHE76 4.0 0.0 1.0
H A:VAL71 4.0 0.0 1.0
CG A:HIS89 4.1 0.0 1.0
CG A:HIS85 4.1 0.0 1.0
ND1 A:HIS89 4.2 0.0 1.0
CA A:CYS72 4.2 0.0 1.0
ND1 A:HIS85 4.2 0.0 1.0
CB A:GLU74 4.3 0.0 1.0
HE2 A:MET86 4.4 0.0 1.0
H A:GLN73 4.4 0.0 1.0
HB2 A:CYS72 4.4 0.0 1.0
CB A:VAL71 4.5 0.0 1.0
CE A:MET86 4.5 0.0 1.0
H A:SER70 4.6 0.0 1.0
HB3 A:GLU74 4.6 0.0 1.0
HG2 A:GLU74 4.6 0.0 1.0
HA A:MET86 4.6 0.0 1.0
HE1 A:PHE76 4.8 0.0 1.0
C A:VAL71 4.8 0.0 1.0
N A:GLU74 4.8 0.0 1.0
HG11 A:VAL71 4.8 0.0 1.0
C A:CYS72 4.8 0.0 1.0
N A:VAL71 4.8 0.0 1.0
N A:GLN73 4.8 0.0 1.0
CA A:CYS69 4.8 0.0 1.0
HG23 A:VAL71 4.9 0.0 1.0
CA A:VAL71 4.9 0.0 1.0
CZ A:PHE76 5.0 0.0 1.0
HE3 A:MET86 5.0 0.0 1.0

Zinc binding site 4 out of 4 in 2dlq

Go back to Zinc Binding Sites List in 2dlq
Zinc binding site 4 out of 4 in the Solution Structure of the Tandem Four Zf-C2H2 Domain Repeats of Murine Gli-Kruppel Family Member HKR3


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Solution Structure of the Tandem Four Zf-C2H2 Domain Repeats of Murine Gli-Kruppel Family Member HKR3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn500

b:0.0
occ:1.00
NE2 A:HIS113 2.1 0.0 1.0
NE2 A:HIS118 2.1 0.0 1.0
SG A:CYS100 2.3 0.0 1.0
SG A:CYS97 2.4 0.0 1.0
CD2 A:HIS118 2.8 0.0 1.0
HD2 A:HIS118 2.9 0.0 1.0
CD2 A:HIS113 3.0 0.0 1.0
CE1 A:HIS113 3.1 0.0 1.0
H A:CYS100 3.2 0.0 1.0
CE1 A:HIS118 3.2 0.0 1.0
HD2 A:HIS113 3.2 0.0 1.0
CB A:CYS97 3.3 0.0 1.0
HE1 A:HIS113 3.3 0.0 1.0
HB3 A:CYS97 3.3 0.0 1.0
HB2 A:CYS97 3.4 0.0 1.0
HB3 A:CYS100 3.4 0.0 1.0
HG2 A:MET114 3.4 0.0 1.0
HB2 A:GLN102 3.4 0.0 1.0
CB A:CYS100 3.5 0.0 1.0
HE1 A:HIS118 3.6 0.0 1.0
HG3 A:GLN102 3.7 0.0 1.0
H A:GLN102 3.8 0.0 1.0
N A:CYS100 4.0 0.0 1.0
HB2 A:SER99 4.0 0.0 1.0
HE3 A:MET114 4.0 0.0 1.0
CG A:HIS118 4.0 0.0 1.0
ND1 A:HIS113 4.1 0.0 1.0
CG A:HIS113 4.2 0.0 1.0
H A:SER101 4.2 0.0 1.0
ND1 A:HIS118 4.2 0.0 1.0
CA A:CYS100 4.3 0.0 1.0
HZ A:PHE104 4.3 0.0 1.0
HB2 A:CYS100 4.4 0.0 1.0
CB A:GLN102 4.4 0.0 1.0
CG A:GLN102 4.4 0.0 1.0
H A:SER98 4.4 0.0 1.0
HE2 A:MET114 4.5 0.0 1.0
CG A:MET114 4.5 0.0 1.0
H A:SER99 4.5 0.0 1.0
HA A:MET114 4.5 0.0 1.0
HG2 A:GLN102 4.5 0.0 1.0
CE A:MET114 4.6 0.0 1.0
HE1 A:PHE104 4.7 0.0 1.0
N A:SER101 4.7 0.0 1.0
CA A:CYS97 4.8 0.0 1.0
N A:GLN102 4.8 0.0 1.0
HB2 A:LEU117 4.8 0.0 1.0
CB A:SER99 4.8 0.0 1.0
HB3 A:SER99 4.9 0.0 1.0
HD12 A:LEU117 4.9 0.0 1.0
C A:CYS100 4.9 0.0 1.0
HG3 A:MET114 5.0 0.0 1.0
HD11 A:LEU110 5.0 0.0 1.0
SD A:MET114 5.0 0.0 1.0
HA A:CYS97 5.0 0.0 1.0

Reference:

K.Inoue, F.Hayashi, K.Izumi, M.Yoshida, S.Yokoyama. Solution Structure of the Tandem Four Zf-C2H2 Domain Repeats of Murine Gli-Kruppel Family Member HKR3 To Be Published.
Page generated: Wed Dec 16 03:21:43 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy