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Zinc in PDB 2dlo: Solution Structure of the Second Lim Domain of Human Thyroid Receptor-Interacting Protein 6

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution Structure of the Second Lim Domain of Human Thyroid Receptor-Interacting Protein 6 (pdb code 2dlo). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of the Second Lim Domain of Human Thyroid Receptor-Interacting Protein 6, PDB code: 2dlo:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2dlo

Go back to Zinc Binding Sites List in 2dlo
Zinc binding site 1 out of 2 in the Solution Structure of the Second Lim Domain of Human Thyroid Receptor-Interacting Protein 6


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the Second Lim Domain of Human Thyroid Receptor-Interacting Protein 6 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:0.0
occ:1.00
ND1 A:HIS38 2.1 0.0 1.0
SG A:CYS41 2.2 0.0 1.0
SG A:CYS21 2.3 0.0 1.0
SG A:CYS18 2.4 0.0 1.0
HB2 A:HIS38 2.8 0.0 1.0
CE1 A:HIS38 3.0 0.0 1.0
H A:CYS21 3.1 0.0 1.0
CG A:HIS38 3.1 0.0 1.0
HB3 A:CYS18 3.1 0.0 1.0
HE1 A:HIS38 3.2 0.0 1.0
CB A:CYS18 3.2 0.0 1.0
HB A:THR20 3.2 0.0 1.0
HB2 A:CYS18 3.2 0.0 1.0
HB2 A:CYS41 3.3 0.0 1.0
CB A:CYS41 3.4 0.0 1.0
HB3 A:CYS21 3.5 0.0 1.0
CB A:HIS38 3.5 0.0 1.0
CB A:CYS21 3.5 0.0 1.0
HB3 A:CYS41 3.7 0.0 1.0
H A:HIS38 3.7 0.0 1.0
N A:CYS21 3.8 0.0 1.0
NE2 A:HIS38 4.1 0.0 1.0
HB2 A:GLN23 4.1 0.0 1.0
CD2 A:HIS38 4.1 0.0 1.0
HB3 A:HIS38 4.1 0.0 1.0
CB A:THR20 4.3 0.0 1.0
CA A:CYS21 4.3 0.0 1.0
H A:THR20 4.4 0.0 1.0
HG1 A:THR20 4.4 0.0 1.0
HB2 A:CYS21 4.4 0.0 1.0
N A:HIS38 4.4 0.0 1.0
CA A:HIS38 4.6 0.0 1.0
H A:GLN23 4.6 0.0 1.0
H A:SER22 4.7 0.0 1.0
CA A:CYS18 4.7 0.0 1.0
H A:CYS41 4.7 0.0 1.0
CA A:CYS41 4.7 0.0 1.0
C A:THR20 4.8 0.0 1.0
OG1 A:THR20 4.9 0.0 1.0
HE2 A:HIS38 4.9 0.0 1.0
HG22 A:THR20 5.0 0.0 1.0
CA A:THR20 5.0 0.0 1.0
HA A:CYS41 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 2dlo

Go back to Zinc Binding Sites List in 2dlo
Zinc binding site 2 out of 2 in the Solution Structure of the Second Lim Domain of Human Thyroid Receptor-Interacting Protein 6


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the Second Lim Domain of Human Thyroid Receptor-Interacting Protein 6 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:0.0
occ:1.00
OD2 A:ASP69 2.1 0.0 1.0
SG A:CYS66 2.2 0.0 1.0
SG A:CYS44 2.3 0.0 1.0
SG A:CYS47 2.3 0.0 1.0
CG A:ASP69 2.5 0.0 1.0
H A:CYS47 2.5 0.0 1.0
HB2 A:ASP69 3.0 0.0 1.0
OD1 A:ASP69 3.1 0.0 1.0
HB A:VAL46 3.1 0.0 1.0
HB3 A:CYS47 3.1 0.0 1.0
H A:CYS66 3.2 0.0 1.0
CB A:ASP69 3.3 0.0 1.0
CB A:CYS47 3.3 0.0 1.0
CB A:CYS44 3.3 0.0 1.0
HB3 A:CYS44 3.3 0.0 1.0
HB2 A:CYS44 3.4 0.0 1.0
N A:CYS47 3.4 0.0 1.0
HB3 A:CYS66 3.5 0.0 1.0
CB A:CYS66 3.5 0.0 1.0
HB3 A:ASP69 3.8 0.0 1.0
H A:VAL46 3.9 0.0 1.0
H A:HIS48 3.9 0.0 1.0
CA A:CYS47 3.9 0.0 1.0
N A:CYS66 4.0 0.0 1.0
H A:ASP69 4.0 0.0 1.0
CB A:VAL46 4.1 0.0 1.0
HG2 A:ARG49 4.2 0.0 1.0
HG13 A:VAL46 4.2 0.0 1.0
HB2 A:CYS47 4.2 0.0 1.0
CA A:CYS66 4.3 0.0 1.0
HB2 A:CYS66 4.3 0.0 1.0
HA A:HIS65 4.4 0.0 1.0
C A:VAL46 4.5 0.0 1.0
H A:ARG49 4.6 0.0 1.0
HD2 A:HIS65 4.6 0.0 1.0
CA A:ASP69 4.6 0.0 1.0
N A:HIS48 4.6 0.0 1.0
CG1 A:VAL46 4.6 0.0 1.0
N A:VAL46 4.6 0.0 1.0
HG12 A:VAL46 4.6 0.0 1.0
CA A:VAL46 4.6 0.0 1.0
N A:ASP69 4.7 0.0 1.0
H A:VAL45 4.7 0.0 1.0
C A:CYS47 4.7 0.0 1.0
CA A:CYS44 4.7 0.0 1.0
O A:CYS66 4.8 0.0 1.0
HE A:ARG49 4.8 0.0 1.0
HA A:CYS47 4.8 0.0 1.0
C A:HIS65 5.0 0.0 1.0

Reference:

X.R.Qin, F.Hayashi, S.Yokoyama. Solution Structure of the Second Lim Domain of Human Thyroid Receptor-Interacting Protein 6 To Be Published.
Page generated: Wed Dec 16 03:21:39 2020

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