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Zinc in PDB 2dj7: Solution Structure of 3RD Lim Domain of Actin-Binding Lim Protein 3

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution Structure of 3RD Lim Domain of Actin-Binding Lim Protein 3 (pdb code 2dj7). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of 3RD Lim Domain of Actin-Binding Lim Protein 3, PDB code: 2dj7:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2dj7

Go back to Zinc Binding Sites List in 2dj7
Zinc binding site 1 out of 2 in the Solution Structure of 3RD Lim Domain of Actin-Binding Lim Protein 3


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of 3RD Lim Domain of Actin-Binding Lim Protein 3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:0.0
occ:1.00
ND1 A:HIS39 2.1 0.0 1.0
SG A:CYS21 2.2 0.0 1.0
SG A:CYS42 2.3 0.0 1.0
SG A:CYS18 2.4 0.0 1.0
HB2 A:HIS39 2.6 0.0 1.0
CG A:HIS39 2.9 0.0 1.0
CE1 A:HIS39 3.0 0.0 1.0
HB2 A:CYS42 3.2 0.0 1.0
HB3 A:CYS18 3.2 0.0 1.0
CB A:CYS42 3.2 0.0 1.0
CB A:CYS18 3.2 0.0 1.0
CB A:HIS39 3.3 0.0 1.0
HE1 A:HIS39 3.3 0.0 1.0
H A:HIS39 3.3 0.0 1.0
HB2 A:CYS18 3.3 0.0 1.0
HB3 A:CYS21 3.3 0.0 1.0
H A:CYS21 3.4 0.0 1.0
CB A:CYS21 3.4 0.0 1.0
HB3 A:CYS42 3.5 0.0 1.0
N A:CYS21 3.9 0.0 1.0
CD2 A:HIS39 3.9 0.0 1.0
NE2 A:HIS39 3.9 0.0 1.0
HB3 A:HIS39 4.0 0.0 1.0
HB2 A:GLU23 4.0 0.0 1.0
N A:HIS39 4.1 0.0 1.0
HB2 A:CYS21 4.3 0.0 1.0
CA A:CYS21 4.3 0.0 1.0
CA A:HIS39 4.3 0.0 1.0
H A:GLY20 4.3 0.0 1.0
HA3 A:GLY20 4.4 0.0 1.0
H A:GLU23 4.7 0.0 1.0
CA A:CYS42 4.7 0.0 1.0
C A:GLY20 4.7 0.0 1.0
CA A:CYS18 4.7 0.0 1.0
HE2 A:HIS39 4.7 0.0 1.0
H A:LYS22 4.8 0.0 1.0
HA A:TRP38 4.8 0.0 1.0
HD2 A:HIS39 4.8 0.0 1.0
HA A:HIS39 4.9 0.0 1.0
CA A:GLY20 4.9 0.0 1.0
HA A:CYS42 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 2dj7

Go back to Zinc Binding Sites List in 2dj7
Zinc binding site 2 out of 2 in the Solution Structure of 3RD Lim Domain of Actin-Binding Lim Protein 3


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of 3RD Lim Domain of Actin-Binding Lim Protein 3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:0.0
occ:1.00
OD2 A:ASP68 1.9 0.0 1.0
SG A:CYS65 2.2 0.0 1.0
SG A:CYS45 2.4 0.0 1.0
SG A:CYS48 2.4 0.0 1.0
HB2 A:ASP68 2.6 0.0 1.0
CG A:ASP68 2.7 0.0 1.0
H A:ASP68 2.9 0.0 1.0
HB3 A:CYS48 3.0 0.0 1.0
H A:CYS65 3.0 0.0 1.0
H A:CYS48 3.1 0.0 1.0
CB A:ASP68 3.2 0.0 1.0
HB2 A:CYS45 3.2 0.0 1.0
CB A:CYS45 3.2 0.0 1.0
CB A:CYS48 3.3 0.0 1.0
HB3 A:CYS45 3.3 0.0 1.0
HB A:THR47 3.5 0.0 1.0
CB A:CYS65 3.5 0.0 1.0
HB3 A:CYS65 3.5 0.0 1.0
HB3 A:SER67 3.6 0.0 1.0
N A:CYS48 3.7 0.0 1.0
N A:ASP68 3.8 0.0 1.0
OD1 A:ASP68 3.8 0.0 1.0
HG13 A:VAL50 3.9 0.0 1.0
N A:CYS65 3.9 0.0 1.0
HB3 A:ASP68 4.0 0.0 1.0
CA A:ASP68 4.1 0.0 1.0
CA A:CYS48 4.1 0.0 1.0
H A:THR47 4.1 0.0 1.0
HB2 A:CYS48 4.1 0.0 1.0
HG12 A:VAL50 4.2 0.0 1.0
CA A:CYS65 4.2 0.0 1.0
HD1 A:TYR64 4.3 0.0 1.0
HB2 A:CYS65 4.3 0.0 1.0
H A:TYR69 4.4 0.0 1.0
H A:SER49 4.4 0.0 1.0
CB A:THR47 4.5 0.0 1.0
CG1 A:VAL50 4.5 0.0 1.0
HA A:TYR64 4.5 0.0 1.0
H A:SER67 4.5 0.0 1.0
CB A:SER67 4.6 0.0 1.0
H A:VAL50 4.7 0.0 1.0
C A:THR47 4.7 0.0 1.0
CA A:CYS45 4.7 0.0 1.0
HG23 A:THR47 4.7 0.0 1.0
HA A:ASP68 4.7 0.0 1.0
O A:CYS65 4.8 0.0 1.0
C A:CYS65 4.8 0.0 1.0
H A:GLN46 4.8 0.0 1.0
N A:THR47 4.8 0.0 1.0
HB2 A:SER67 4.9 0.0 1.0
HB3 A:TYR64 4.9 0.0 1.0
C A:SER67 4.9 0.0 1.0
HA A:CYS48 4.9 0.0 1.0
C A:CYS48 4.9 0.0 1.0
N A:SER49 4.9 0.0 1.0
CA A:THR47 4.9 0.0 1.0
HA A:CYS45 5.0 0.0 1.0

Reference:

T.N.Niraula, A.Sasagawa, S.Koshiba, M.Inoue, T.Kigawa, S.Yokoyama. Solution Structure of 3RD Lim Domain of Actin-Binding Lim Protein 3 To Be Published.
Page generated: Wed Dec 16 03:21:22 2020

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