Zinc in PDB 2did: One Sequence Two Fold ? : Correct Fold of the Zf-B-Box Domain From Human Tripartite Motif Protein 39
Zinc Binding Sites:
The binding sites of Zinc atom in the One Sequence Two Fold ? : Correct Fold of the Zf-B-Box Domain From Human Tripartite Motif Protein 39
(pdb code 2did). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the
One Sequence Two Fold ? : Correct Fold of the Zf-B-Box Domain From Human Tripartite Motif Protein 39, PDB code: 2did:
Jump to Zinc binding site number:
1;
2;
Zinc binding site 1 out
of 2 in 2did
Go back to
Zinc Binding Sites List in 2did
Zinc binding site 1 out
of 2 in the One Sequence Two Fold ? : Correct Fold of the Zf-B-Box Domain From Human Tripartite Motif Protein 39
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of One Sequence Two Fold ? : Correct Fold of the Zf-B-Box Domain From Human Tripartite Motif Protein 39 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn201
b:0.0
occ:1.00
|
ND1
|
A:HIS14
|
1.9
|
0.0
|
1.0
|
SG
|
A:CYS30
|
2.2
|
0.0
|
1.0
|
SG
|
A:CYS33
|
2.3
|
0.0
|
1.0
|
SG
|
A:CYS11
|
2.4
|
0.0
|
1.0
|
CE1
|
A:HIS14
|
2.7
|
0.0
|
1.0
|
HB2
|
A:HIS14
|
2.9
|
0.0
|
1.0
|
H
|
A:CYS33
|
2.9
|
0.0
|
1.0
|
HE1
|
A:HIS14
|
3.0
|
0.0
|
1.0
|
CG
|
A:HIS14
|
3.0
|
0.0
|
1.0
|
H
|
A:CYS30
|
3.3
|
0.0
|
1.0
|
HB2
|
A:CYS11
|
3.4
|
0.0
|
1.0
|
CB
|
A:CYS11
|
3.4
|
0.0
|
1.0
|
HB3
|
A:CYS30
|
3.4
|
0.0
|
1.0
|
HB2
|
A:CYS33
|
3.5
|
0.0
|
1.0
|
CB
|
A:CYS30
|
3.5
|
0.0
|
1.0
|
CB
|
A:HIS14
|
3.5
|
0.0
|
1.0
|
CB
|
A:CYS33
|
3.5
|
0.0
|
1.0
|
HB
|
A:ILE32
|
3.5
|
0.0
|
1.0
|
HB3
|
A:CYS11
|
3.6
|
0.0
|
1.0
|
N
|
A:CYS33
|
3.8
|
0.0
|
1.0
|
NE2
|
A:HIS14
|
3.8
|
0.0
|
1.0
|
H
|
A:HIS14
|
3.9
|
0.0
|
1.0
|
N
|
A:CYS30
|
3.9
|
0.0
|
1.0
|
CD2
|
A:HIS14
|
3.9
|
0.0
|
1.0
|
CA
|
A:CYS33
|
4.1
|
0.0
|
1.0
|
HB3
|
A:HIS14
|
4.2
|
0.0
|
1.0
|
CA
|
A:CYS30
|
4.2
|
0.0
|
1.0
|
HB2
|
A:CYS30
|
4.3
|
0.0
|
1.0
|
HA
|
A:CYS33
|
4.3
|
0.0
|
1.0
|
HG12
|
A:ILE32
|
4.3
|
0.0
|
1.0
|
HB3
|
A:GLN13
|
4.4
|
0.0
|
1.0
|
HB3
|
A:CYS33
|
4.4
|
0.0
|
1.0
|
N
|
A:HIS14
|
4.4
|
0.0
|
1.0
|
CB
|
A:ILE32
|
4.5
|
0.0
|
1.0
|
HA
|
A:VAL29
|
4.5
|
0.0
|
1.0
|
HB
|
A:VAL29
|
4.6
|
0.0
|
1.0
|
CA
|
A:HIS14
|
4.6
|
0.0
|
1.0
|
HE2
|
A:HIS14
|
4.7
|
0.0
|
1.0
|
C
|
A:CYS30
|
4.7
|
0.0
|
1.0
|
H
|
A:ILE32
|
4.8
|
0.0
|
1.0
|
HD22
|
A:LEU18
|
4.8
|
0.0
|
1.0
|
CA
|
A:CYS11
|
4.8
|
0.0
|
1.0
|
O
|
A:CYS30
|
4.8
|
0.0
|
1.0
|
H
|
A:GLN13
|
4.9
|
0.0
|
1.0
|
C
|
A:ILE32
|
4.9
|
0.0
|
1.0
|
C
|
A:VAL29
|
4.9
|
0.0
|
1.0
|
HD2
|
A:PRO12
|
4.9
|
0.0
|
1.0
|
HD2
|
A:HIS14
|
4.9
|
0.0
|
1.0
|
CG1
|
A:ILE32
|
4.9
|
0.0
|
1.0
|
HB2
|
A:GLU16
|
5.0
|
0.0
|
1.0
|
HA
|
A:CYS11
|
5.0
|
0.0
|
1.0
|
|
Zinc binding site 2 out
of 2 in 2did
Go back to
Zinc Binding Sites List in 2did
Zinc binding site 2 out
of 2 in the One Sequence Two Fold ? : Correct Fold of the Zf-B-Box Domain From Human Tripartite Motif Protein 39
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of One Sequence Two Fold ? : Correct Fold of the Zf-B-Box Domain From Human Tripartite Motif Protein 39 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn401
b:0.0
occ:1.00
|
ND1
|
A:HIS39
|
1.9
|
0.0
|
1.0
|
ND1
|
A:HIS42
|
1.9
|
0.0
|
1.0
|
OD1
|
A:ASP25
|
1.9
|
0.0
|
1.0
|
SG
|
A:CYS22
|
2.2
|
0.0
|
1.0
|
CG
|
A:ASP25
|
2.7
|
0.0
|
1.0
|
CE1
|
A:HIS39
|
2.8
|
0.0
|
1.0
|
CE1
|
A:HIS42
|
2.9
|
0.0
|
1.0
|
CG
|
A:HIS42
|
2.9
|
0.0
|
1.0
|
HB3
|
A:HIS39
|
2.9
|
0.0
|
1.0
|
HB3
|
A:HIS42
|
3.0
|
0.0
|
1.0
|
CG
|
A:HIS39
|
3.0
|
0.0
|
1.0
|
HE1
|
A:HIS39
|
3.0
|
0.0
|
1.0
|
HE1
|
A:HIS42
|
3.1
|
0.0
|
1.0
|
OD2
|
A:ASP25
|
3.3
|
0.0
|
1.0
|
CB
|
A:HIS42
|
3.3
|
0.0
|
1.0
|
HB2
|
A:HIS42
|
3.4
|
0.0
|
1.0
|
H
|
A:ASP25
|
3.4
|
0.0
|
1.0
|
CB
|
A:HIS39
|
3.4
|
0.0
|
1.0
|
CB
|
A:CYS22
|
3.4
|
0.0
|
1.0
|
HA
|
A:HIS39
|
3.4
|
0.0
|
1.0
|
HB2
|
A:ASP25
|
3.5
|
0.0
|
1.0
|
HB2
|
A:CYS22
|
3.5
|
0.0
|
1.0
|
HB3
|
A:CYS22
|
3.7
|
0.0
|
1.0
|
CB
|
A:ASP25
|
3.7
|
0.0
|
1.0
|
HB3
|
A:GLU24
|
3.9
|
0.0
|
1.0
|
NE2
|
A:HIS39
|
4.0
|
0.0
|
1.0
|
CA
|
A:HIS39
|
4.0
|
0.0
|
1.0
|
NE2
|
A:HIS42
|
4.0
|
0.0
|
1.0
|
CD2
|
A:HIS42
|
4.0
|
0.0
|
1.0
|
CD2
|
A:HIS39
|
4.1
|
0.0
|
1.0
|
N
|
A:ASP25
|
4.2
|
0.0
|
1.0
|
HB2
|
A:HIS39
|
4.4
|
0.0
|
1.0
|
HB3
|
A:ASP25
|
4.5
|
0.0
|
1.0
|
CA
|
A:ASP25
|
4.6
|
0.0
|
1.0
|
HG21
|
A:THR38
|
4.7
|
0.0
|
1.0
|
HG21
|
A:VAL44
|
4.8
|
0.0
|
1.0
|
CA
|
A:HIS42
|
4.8
|
0.0
|
1.0
|
O
|
A:THR38
|
4.8
|
0.0
|
1.0
|
CA
|
A:CYS22
|
4.8
|
0.0
|
1.0
|
N
|
A:HIS39
|
4.8
|
0.0
|
1.0
|
HE2
|
A:HIS39
|
4.8
|
0.0
|
1.0
|
HE2
|
A:HIS42
|
4.9
|
0.0
|
1.0
|
CB
|
A:GLU24
|
4.9
|
0.0
|
1.0
|
HA
|
A:CYS22
|
4.9
|
0.0
|
1.0
|
HG13
|
A:VAL29
|
5.0
|
0.0
|
1.0
|
|
Reference:
T.Tomizawa,
S.Koshiba,
M.Inoue,
T.Kigawa,
S.Yokoyama.
One Sequence Two Fold ? : Correct Fold of the Zf-B-Box Domain From Human Tripartite Motif Protein 39 To Be Published.
Page generated: Wed Oct 16 22:43:39 2024
|