Atomistry » Zinc » PDB 2dar-2dqm » 2did
Atomistry »
  Zinc »
    PDB 2dar-2dqm »
      2did »

Zinc in PDB 2did: One Sequence Two Fold ? : Correct Fold of the Zf-B-Box Domain From Human Tripartite Motif Protein 39

Zinc Binding Sites:

The binding sites of Zinc atom in the One Sequence Two Fold ? : Correct Fold of the Zf-B-Box Domain From Human Tripartite Motif Protein 39 (pdb code 2did). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the One Sequence Two Fold ? : Correct Fold of the Zf-B-Box Domain From Human Tripartite Motif Protein 39, PDB code: 2did:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2did

Go back to Zinc Binding Sites List in 2did
Zinc binding site 1 out of 2 in the One Sequence Two Fold ? : Correct Fold of the Zf-B-Box Domain From Human Tripartite Motif Protein 39


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of One Sequence Two Fold ? : Correct Fold of the Zf-B-Box Domain From Human Tripartite Motif Protein 39 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:0.0
occ:1.00
ND1 A:HIS14 1.9 0.0 1.0
SG A:CYS30 2.2 0.0 1.0
SG A:CYS33 2.3 0.0 1.0
SG A:CYS11 2.4 0.0 1.0
CE1 A:HIS14 2.7 0.0 1.0
HB2 A:HIS14 2.9 0.0 1.0
H A:CYS33 2.9 0.0 1.0
HE1 A:HIS14 3.0 0.0 1.0
CG A:HIS14 3.0 0.0 1.0
H A:CYS30 3.3 0.0 1.0
HB2 A:CYS11 3.4 0.0 1.0
CB A:CYS11 3.4 0.0 1.0
HB3 A:CYS30 3.4 0.0 1.0
HB2 A:CYS33 3.5 0.0 1.0
CB A:CYS30 3.5 0.0 1.0
CB A:HIS14 3.5 0.0 1.0
CB A:CYS33 3.5 0.0 1.0
HB A:ILE32 3.5 0.0 1.0
HB3 A:CYS11 3.6 0.0 1.0
N A:CYS33 3.8 0.0 1.0
NE2 A:HIS14 3.8 0.0 1.0
H A:HIS14 3.9 0.0 1.0
N A:CYS30 3.9 0.0 1.0
CD2 A:HIS14 3.9 0.0 1.0
CA A:CYS33 4.1 0.0 1.0
HB3 A:HIS14 4.2 0.0 1.0
CA A:CYS30 4.2 0.0 1.0
HB2 A:CYS30 4.3 0.0 1.0
HA A:CYS33 4.3 0.0 1.0
HG12 A:ILE32 4.3 0.0 1.0
HB3 A:GLN13 4.4 0.0 1.0
HB3 A:CYS33 4.4 0.0 1.0
N A:HIS14 4.4 0.0 1.0
CB A:ILE32 4.5 0.0 1.0
HA A:VAL29 4.5 0.0 1.0
HB A:VAL29 4.6 0.0 1.0
CA A:HIS14 4.6 0.0 1.0
HE2 A:HIS14 4.7 0.0 1.0
C A:CYS30 4.7 0.0 1.0
H A:ILE32 4.8 0.0 1.0
HD22 A:LEU18 4.8 0.0 1.0
CA A:CYS11 4.8 0.0 1.0
O A:CYS30 4.8 0.0 1.0
H A:GLN13 4.9 0.0 1.0
C A:ILE32 4.9 0.0 1.0
C A:VAL29 4.9 0.0 1.0
HD2 A:PRO12 4.9 0.0 1.0
HD2 A:HIS14 4.9 0.0 1.0
CG1 A:ILE32 4.9 0.0 1.0
HB2 A:GLU16 5.0 0.0 1.0
HA A:CYS11 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 2did

Go back to Zinc Binding Sites List in 2did
Zinc binding site 2 out of 2 in the One Sequence Two Fold ? : Correct Fold of the Zf-B-Box Domain From Human Tripartite Motif Protein 39


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of One Sequence Two Fold ? : Correct Fold of the Zf-B-Box Domain From Human Tripartite Motif Protein 39 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:0.0
occ:1.00
ND1 A:HIS39 1.9 0.0 1.0
ND1 A:HIS42 1.9 0.0 1.0
OD1 A:ASP25 1.9 0.0 1.0
SG A:CYS22 2.2 0.0 1.0
CG A:ASP25 2.7 0.0 1.0
CE1 A:HIS39 2.8 0.0 1.0
CE1 A:HIS42 2.9 0.0 1.0
CG A:HIS42 2.9 0.0 1.0
HB3 A:HIS39 2.9 0.0 1.0
HB3 A:HIS42 3.0 0.0 1.0
CG A:HIS39 3.0 0.0 1.0
HE1 A:HIS39 3.0 0.0 1.0
HE1 A:HIS42 3.1 0.0 1.0
OD2 A:ASP25 3.3 0.0 1.0
CB A:HIS42 3.3 0.0 1.0
HB2 A:HIS42 3.4 0.0 1.0
H A:ASP25 3.4 0.0 1.0
CB A:HIS39 3.4 0.0 1.0
CB A:CYS22 3.4 0.0 1.0
HA A:HIS39 3.4 0.0 1.0
HB2 A:ASP25 3.5 0.0 1.0
HB2 A:CYS22 3.5 0.0 1.0
HB3 A:CYS22 3.7 0.0 1.0
CB A:ASP25 3.7 0.0 1.0
HB3 A:GLU24 3.9 0.0 1.0
NE2 A:HIS39 4.0 0.0 1.0
CA A:HIS39 4.0 0.0 1.0
NE2 A:HIS42 4.0 0.0 1.0
CD2 A:HIS42 4.0 0.0 1.0
CD2 A:HIS39 4.1 0.0 1.0
N A:ASP25 4.2 0.0 1.0
HB2 A:HIS39 4.4 0.0 1.0
HB3 A:ASP25 4.5 0.0 1.0
CA A:ASP25 4.6 0.0 1.0
HG21 A:THR38 4.7 0.0 1.0
HG21 A:VAL44 4.8 0.0 1.0
CA A:HIS42 4.8 0.0 1.0
O A:THR38 4.8 0.0 1.0
CA A:CYS22 4.8 0.0 1.0
N A:HIS39 4.8 0.0 1.0
HE2 A:HIS39 4.8 0.0 1.0
HE2 A:HIS42 4.9 0.0 1.0
CB A:GLU24 4.9 0.0 1.0
HA A:CYS22 4.9 0.0 1.0
HG13 A:VAL29 5.0 0.0 1.0

Reference:

T.Tomizawa, S.Koshiba, M.Inoue, T.Kigawa, S.Yokoyama. One Sequence Two Fold ? : Correct Fold of the Zf-B-Box Domain From Human Tripartite Motif Protein 39 To Be Published.
Page generated: Wed Oct 16 22:43:39 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy