Zinc in PDB 2di3: Crystal Structure of the Transcriptional Factor CGL2915 From Corynebacterium Glutamicum

The structure of Crystal Structure of the Transcriptional Factor CGL2915 From Corynebacterium Glutamicum, PDB code: 2di3 was solved by Y.G.Gao, M.Yao, I.Tanaka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 2.05
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	95.750, 107.634, 104.838, 90.00, 90.00, 90.00
R / Rfree (%)	20.5 / 25

The binding sites of Zinc atom in the Crystal Structure of the Transcriptional Factor CGL2915 From Corynebacterium Glutamicum (pdb code 2di3). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of the Transcriptional Factor CGL2915 From Corynebacterium Glutamicum, PDB code: 2di3:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of the Transcriptional Factor CGL2915 From Corynebacterium Glutamicum


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Transcriptional Factor CGL2915 From Corynebacterium Glutamicum within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1002 b:26.5 occ:1.00 NE2 A:HIS196 2.1 30.7 1.0 NE2 A:HIS218 2.2 23.7 1.0 NE2 A:HIS148 2.2 17.0 1.0 OD1 A:ASP144 2.3 22.6 1.0 O A:HOH1005 2.3 23.6 1.0 CE1 A:HIS196 3.0 31.8 1.0 CG A:ASP144 3.1 23.2 1.0 CD2 A:HIS148 3.1 18.5 1.0 CE1 A:HIS218 3.1 26.0 1.0 OD2 A:ASP144 3.1 22.3 1.0 O A:HOH1007 3.2 24.3 1.0 CD2 A:HIS218 3.2 24.5 1.0 CE1 A:HIS148 3.2 18.5 1.0 CD2 A:HIS196 3.2 31.2 1.0 O A:HOH1018 4.0 19.5 1.0 O A:HOH1194 4.2 33.9 1.0 ND1 A:HIS196 4.2 31.7 1.0 ND1 A:HIS218 4.2 25.2 1.0 CG A:HIS148 4.2 20.0 1.0 ND1 A:HIS148 4.3 19.6 1.0 CG A:HIS196 4.3 32.8 1.0 CG A:HIS218 4.3 24.9 1.0 CB A:ASP144 4.5 21.9 1.0 NH2 A:ARG102 4.6 16.2 1.0 O A:ASP144 4.8 20.3 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of the Transcriptional Factor CGL2915 From Corynebacterium Glutamicum


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of the Transcriptional Factor CGL2915 From Corynebacterium Glutamicum within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1001 b:24.7 occ:1.00 NE2 B:HIS196 2.1 22.4 1.0 NE2 B:HIS148 2.2 18.6 1.0 OD1 B:ASP144 2.2 22.2 1.0 NE2 B:HIS218 2.2 19.5 1.0 O B:HOH1004 2.4 17.9 1.0 CG B:ASP144 3.1 24.9 1.0 CD2 B:HIS196 3.1 22.7 1.0 CE1 B:HIS196 3.1 22.1 1.0 CD2 B:HIS148 3.1 17.3 1.0 CE1 B:HIS148 3.2 17.9 1.0 OD2 B:ASP144 3.2 24.4 1.0 CE1 B:HIS218 3.2 18.7 1.0 CD2 B:HIS218 3.2 18.9 1.0 O B:HOH1003 3.4 25.9 1.0 O B:HOH1045 4.1 18.7 1.0 ND1 B:HIS196 4.2 24.2 1.0 CG B:HIS196 4.2 22.3 1.0 ND1 B:HIS148 4.3 18.2 1.0 O B:HOH1209 4.3 36.9 1.0 CG B:HIS148 4.3 18.5 1.0 ND1 B:HIS218 4.3 18.4 1.0 CG B:HIS218 4.4 19.5 1.0 CB B:ASP144 4.5 23.1 1.0 NH2 B:ARG102 4.6 16.7 1.0 O B:ASP144 4.8 21.2 1.0

Y.G.Gao, H.Suzuki, H.Itou, Y.Zhou, Y.Tanaka, M.Wachi, N.Watanabe, I.Tanaka, M.Yao. Structural and Functional Characterization of the Lldr From Corynebacterium Glutamicum: A Transcriptional Repressor Involved in L-Lactate and Sugar Utilization Nucleic Acids Res. V. 36 7110 2008.
ISSN: ISSN 0305-1048
PubMed: 18988622
DOI: 10.1093/NAR/GKN827