Zinc in PDB 2dh3: Crystal Structure of Human Ed-4F2HC

The structure of Crystal Structure of Human Ed-4F2HC, PDB code: 2dh3 was solved by J.Fort, I.Fita, M.Palacin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.00 / 2.80
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	69.497, 101.786, 121.966, 90.00, 90.00, 90.00
R / Rfree (%)	21.7 / 27.5

The binding sites of Zinc atom in the Crystal Structure of Human Ed-4F2HC (pdb code 2dh3). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Human Ed-4F2HC, PDB code: 2dh3:

Zinc binding site 1 out of 1 in the Crystal Structure of Human Ed-4F2HC


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Human Ed-4F2HC within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn601 b:46.0 occ:1.00 OD1 A:ASP439 2.0 47.6 1.0 NE2 B:HIS441 2.1 44.8 1.0 NE2 A:HIS441 2.1 43.7 1.0 NE2 A:HIS455 2.2 41.1 1.0 CG A:ASP439 2.8 47.0 1.0 CE1 A:HIS455 2.9 41.1 1.0 OD2 A:ASP439 2.9 47.2 1.0 CE1 B:HIS441 3.0 44.7 1.0 CD2 A:HIS441 3.1 43.9 1.0 CE1 A:HIS441 3.1 43.8 1.0 CD2 B:HIS441 3.2 44.7 1.0 CD2 A:HIS455 3.4 41.5 1.0 ND1 A:HIS455 4.1 41.1 1.0 ND1 B:HIS441 4.1 44.8 1.0 CB A:ASP439 4.2 46.8 1.0 CG A:PRO483 4.2 60.9 1.0 ND1 A:HIS441 4.2 43.9 1.0 CG A:HIS441 4.2 44.8 1.0 CG B:HIS441 4.2 45.1 1.0 CG A:HIS455 4.3 41.7 1.0 OD2 B:ASP439 4.7 45.8 1.0 N A:PHE440 4.8 46.4 1.0 C A:ASP439 4.8 46.6 1.0 CA A:ASP439 4.8 46.8 1.0 CG B:PRO483 4.9 61.5 1.0 CD B:PRO483 5.0 61.5 1.0

J.Fort, L.R.De La Ballina, H.E.Burghardt, C.Ferrer-Costa, J.Turnay, C.Ferrer-Orta, I.Uson, A.Zorzano, J.Fernandez-Recio, M.Orozco, M.A.Lizarbe, I.Fita, M.Palacin. The Structure of Human 4F2HC Ectodomain Provides A Model For Homodimerization and Electrostatic Interaction with Plasma Membrane. J.Biol.Chem. V. 282 31444 2007.
ISSN: ISSN 0021-9258
PubMed: 17724034
DOI: 10.1074/JBC.M704524200