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Zinc in PDB 2d8q: Solution Structure of the Mynd Domain of the Human Zinc Finger Mynd Domain-Containing Protein 10

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution Structure of the Mynd Domain of the Human Zinc Finger Mynd Domain-Containing Protein 10 (pdb code 2d8q). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of the Mynd Domain of the Human Zinc Finger Mynd Domain-Containing Protein 10, PDB code: 2d8q:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2d8q

Go back to Zinc Binding Sites List in 2d8q
Zinc binding site 1 out of 2 in the Solution Structure of the Mynd Domain of the Human Zinc Finger Mynd Domain-Containing Protein 10


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the Mynd Domain of the Human Zinc Finger Mynd Domain-Containing Protein 10 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:0.0
occ:1.00
SG A:CYS42 2.3 0.0 1.0
SG A:CYS21 2.3 0.0 1.0
SG A:CYS18 2.3 0.0 1.0
SG A:CYS38 2.3 0.0 1.0
H A:CYS21 2.9 0.0 1.0
HB2 A:CYS42 3.1 0.0 1.0
H A:CYS38 3.2 0.0 1.0
HB2 A:CYS18 3.2 0.0 1.0
CB A:CYS42 3.3 0.0 1.0
CB A:CYS18 3.3 0.0 1.0
HB3 A:CYS38 3.3 0.0 1.0
HB3 A:CYS18 3.4 0.0 1.0
HB3 A:CYS21 3.4 0.0 1.0
HB3 A:TYR20 3.5 0.0 1.0
CB A:CYS21 3.5 0.0 1.0
CB A:CYS38 3.5 0.0 1.0
HB3 A:CYS42 3.5 0.0 1.0
N A:CYS21 3.7 0.0 1.0
H A:CYS39 3.8 0.0 1.0
H A:ALA23 3.9 0.0 1.0
HB3 A:ALA23 4.0 0.0 1.0
H A:TYR20 4.0 0.0 1.0
N A:CYS38 4.1 0.0 1.0
CA A:CYS21 4.1 0.0 1.0
HB2 A:CYS38 4.3 0.0 1.0
CA A:CYS38 4.4 0.0 1.0
HB2 A:CYS21 4.4 0.0 1.0
HD1 A:TYR37 4.5 0.0 1.0
CB A:TYR20 4.5 0.0 1.0
H A:CYS42 4.6 0.0 1.0
H A:SER22 4.6 0.0 1.0
N A:CYS39 4.6 0.0 1.0
C A:CYS21 4.6 0.0 1.0
CA A:CYS42 4.7 0.0 1.0
CA A:CYS18 4.7 0.0 1.0
HB2 A:ALA23 4.7 0.0 1.0
C A:TYR20 4.7 0.0 1.0
H A:ALA19 4.8 0.0 1.0
CB A:ALA23 4.8 0.0 1.0
N A:TYR20 4.8 0.0 1.0
HB2 A:TYR20 4.8 0.0 1.0
N A:SER22 4.8 0.0 1.0
HA A:TYR37 4.8 0.0 1.0
N A:ALA23 4.8 0.0 1.0
HB3 A:TYR37 4.9 0.0 1.0
CA A:TYR20 4.9 0.0 1.0
HA A:CYS18 4.9 0.0 1.0

Zinc binding site 2 out of 2 in 2d8q

Go back to Zinc Binding Sites List in 2d8q
Zinc binding site 2 out of 2 in the Solution Structure of the Mynd Domain of the Human Zinc Finger Mynd Domain-Containing Protein 10


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the Mynd Domain of the Human Zinc Finger Mynd Domain-Containing Protein 10 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:0.0
occ:1.00
SG A:CYS29 2.3 0.0 1.0
SG A:CYS32 2.4 0.0 1.0
NE2 A:HIS50 2.4 0.0 1.0
SG A:CYS54 2.4 0.0 1.0
HB3 A:ARG31 3.0 0.0 1.0
HB2 A:CYS54 3.0 0.0 1.0
CE1 A:HIS50 3.1 0.0 1.0
HE1 A:HIS50 3.1 0.0 1.0
H A:CYS32 3.1 0.0 1.0
HB3 A:CYS29 3.2 0.0 1.0
CB A:CYS54 3.3 0.0 1.0
CB A:CYS29 3.3 0.0 1.0
HB3 A:CYS32 3.3 0.0 1.0
HB2 A:CYS29 3.4 0.0 1.0
CB A:CYS32 3.4 0.0 1.0
CD2 A:HIS50 3.5 0.0 1.0
HA A:CYS54 3.6 0.0 1.0
N A:CYS32 3.7 0.0 1.0
HD2 A:HIS50 3.8 0.0 1.0
H A:GLN33 4.0 0.0 1.0
CA A:CYS54 4.0 0.0 1.0
CB A:ARG31 4.0 0.0 1.0
CA A:CYS32 4.1 0.0 1.0
HB3 A:CYS54 4.1 0.0 1.0
H A:ARG31 4.3 0.0 1.0
HB2 A:GLU35 4.3 0.0 1.0
H A:ASN34 4.3 0.0 1.0
ND1 A:HIS50 4.3 0.0 1.0
HB2 A:CYS32 4.3 0.0 1.0
HB2 A:ARG31 4.3 0.0 1.0
C A:ARG31 4.5 0.0 1.0
CG A:HIS50 4.5 0.0 1.0
N A:GLN33 4.7 0.0 1.0
HB3 A:GLU35 4.7 0.0 1.0
HG2 A:ARG31 4.7 0.0 1.0
CA A:ARG31 4.7 0.0 1.0
CA A:CYS29 4.7 0.0 1.0
N A:ARG31 4.8 0.0 1.0
H A:VAL55 4.9 0.0 1.0
C A:CYS32 4.9 0.0 1.0
N A:CYS54 4.9 0.0 1.0
HE21 A:GLN43 5.0 0.0 1.0
CG A:ARG31 5.0 0.0 1.0
CB A:GLU35 5.0 0.0 1.0

Reference:

K.Miyamoto, T.Kigawa, T.Tomizawa, N.Tochio, A.Sasagawa, S.Koshiba, M.Inoue, S.Yokoyama. Solution Structure of the Mynd Domain of the Human Zinc Finger Mynd Domain-Containing Protein 10 To Be Published.
Page generated: Wed Dec 16 03:20:42 2020

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