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Zinc in PDB 2cup: Solution Structure of the Skeletal Muscle Lim-Protein 1

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution Structure of the Skeletal Muscle Lim-Protein 1 (pdb code 2cup). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Solution Structure of the Skeletal Muscle Lim-Protein 1, PDB code: 2cup:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in 2cup

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Zinc binding site 1 out of 3 in the Solution Structure of the Skeletal Muscle Lim-Protein 1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the Skeletal Muscle Lim-Protein 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:0.0
occ:1.00
SG A:CYS33 2.3 0.0 1.0
SG A:CYS11 2.3 0.0 1.0
ND1 A:HIS30 2.3 0.0 1.0
SG A:CYS8 2.4 0.0 1.0
HB2 A:HIS30 2.6 0.0 1.0
H A:HIS30 2.9 0.0 1.0
H A:CYS11 3.1 0.0 1.0
CG A:HIS30 3.2 0.0 1.0
HB2 A:CYS33 3.2 0.0 1.0
HB2 A:CYS8 3.2 0.0 1.0
CB A:CYS8 3.2 0.0 1.0
HB3 A:CYS8 3.3 0.0 1.0
CB A:HIS30 3.3 0.0 1.0
CB A:CYS33 3.3 0.0 1.0
CE1 A:HIS30 3.3 0.0 1.0
HB3 A:CYS11 3.4 0.0 1.0
HB3 A:GLU10 3.4 0.0 1.0
CB A:CYS11 3.5 0.0 1.0
HE1 A:HIS30 3.6 0.0 1.0
HB3 A:CYS33 3.6 0.0 1.0
N A:HIS30 3.7 0.0 1.0
N A:CYS11 3.9 0.0 1.0
HA A:TRP29 4.2 0.0 1.0
CA A:HIS30 4.2 0.0 1.0
HB3 A:HIS30 4.2 0.0 1.0
CA A:CYS11 4.3 0.0 1.0
CD2 A:HIS30 4.3 0.0 1.0
HB2 A:CYS11 4.3 0.0 1.0
H A:GLU10 4.4 0.0 1.0
NE2 A:HIS30 4.4 0.0 1.0
CB A:GLU10 4.4 0.0 1.0
HB2 A:GLU10 4.6 0.0 1.0
HB2 A:LYS13 4.6 0.0 1.0
H A:LYS13 4.7 0.0 1.0
CA A:CYS8 4.7 0.0 1.0
CA A:CYS33 4.7 0.0 1.0
H A:CYS33 4.8 0.0 1.0
HA A:HIS30 4.8 0.0 1.0
C A:TRP29 4.8 0.0 1.0
C A:GLU10 4.9 0.0 1.0
H A:ARG12 5.0 0.0 1.0
CA A:TRP29 5.0 0.0 1.0
HA A:CYS8 5.0 0.0 1.0

Zinc binding site 2 out of 3 in 2cup

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Zinc binding site 2 out of 3 in the Solution Structure of the Skeletal Muscle Lim-Protein 1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the Skeletal Muscle Lim-Protein 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:0.0
occ:1.00
SG A:CYS57 2.3 0.0 1.0
SG A:CYS39 2.3 0.0 1.0
SG A:CYS60 2.3 0.0 1.0
SG A:CYS36 2.4 0.0 1.0
HB2 A:CYS60 3.0 0.0 1.0
H A:CYS57 3.0 0.0 1.0
H A:CYS39 3.0 0.0 1.0
CB A:CYS60 3.3 0.0 1.0
CB A:CYS36 3.3 0.0 1.0
HB2 A:CYS36 3.3 0.0 1.0
HB3 A:CYS36 3.3 0.0 1.0
HB3 A:CYS39 3.4 0.0 1.0
HB3 A:LYS38 3.4 0.0 1.0
HB3 A:CYS57 3.4 0.0 1.0
CB A:CYS39 3.5 0.0 1.0
CB A:CYS57 3.5 0.0 1.0
N A:CYS39 3.7 0.0 1.0
H A:CYS60 3.8 0.0 1.0
N A:CYS57 3.8 0.0 1.0
HB3 A:CYS60 4.0 0.0 1.0
H A:LYS38 4.0 0.0 1.0
CA A:CYS57 4.2 0.0 1.0
N A:CYS60 4.2 0.0 1.0
CA A:CYS39 4.2 0.0 1.0
CA A:CYS60 4.3 0.0 1.0
HB2 A:CYS39 4.4 0.0 1.0
CB A:LYS38 4.4 0.0 1.0
HB2 A:CYS57 4.4 0.0 1.0
HB2 A:LYS59 4.4 0.0 1.0
HA A:LEU56 4.5 0.0 1.0
HD23 A:LEU56 4.5 0.0 1.0
HB3 A:HIS41 4.5 0.0 1.0
HB2 A:LYS38 4.5 0.0 1.0
H A:LEU40 4.5 0.0 1.0
H A:HIS41 4.6 0.0 1.0
O A:CYS57 4.7 0.0 1.0
HB3 A:LEU56 4.7 0.0 1.0
HD21 A:LEU56 4.7 0.0 1.0
C A:LYS38 4.7 0.0 1.0
CA A:CYS36 4.7 0.0 1.0
HA A:CYS60 4.8 0.0 1.0
C A:CYS57 4.8 0.0 1.0
H A:ALA37 4.8 0.0 1.0
N A:LYS38 4.8 0.0 1.0
CA A:LYS38 4.9 0.0 1.0
C A:LEU56 4.9 0.0 1.0
HB3 A:LYS59 5.0 0.0 1.0
HA A:CYS36 5.0 0.0 1.0
C A:CYS39 5.0 0.0 1.0

Zinc binding site 3 out of 3 in 2cup

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Zinc binding site 3 out of 3 in the Solution Structure of the Skeletal Muscle Lim-Protein 1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Solution Structure of the Skeletal Muscle Lim-Protein 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn601

b:0.0
occ:1.00
SG A:CYS72 2.3 0.0 1.0
SG A:CYS69 2.3 0.0 1.0
ND1 A:HIS91 2.3 0.0 1.0
SG A:CYS94 2.3 0.0 1.0
HB2 A:HIS91 2.7 0.0 1.0
H A:HIS91 2.9 0.0 1.0
H A:CYS72 3.0 0.0 1.0
CG A:HIS91 3.1 0.0 1.0
CE1 A:HIS91 3.3 0.0 1.0
HB3 A:CYS69 3.3 0.0 1.0
CB A:CYS69 3.3 0.0 1.0
HB3 A:CYS72 3.4 0.0 1.0
CB A:HIS91 3.4 0.0 1.0
HB2 A:CYS94 3.4 0.0 1.0
HB2 A:CYS69 3.4 0.0 1.0
CB A:CYS72 3.5 0.0 1.0
CB A:CYS94 3.5 0.0 1.0
HE1 A:HIS91 3.6 0.0 1.0
N A:CYS72 3.6 0.0 1.0
N A:HIS91 3.8 0.0 1.0
HB3 A:CYS94 3.9 0.0 1.0
H A:GLY71 3.9 0.0 1.0
HA3 A:GLY71 4.1 0.0 1.0
CA A:CYS72 4.1 0.0 1.0
CD2 A:HIS91 4.2 0.0 1.0
HB3 A:HIS91 4.2 0.0 1.0
CA A:HIS91 4.2 0.0 1.0
NE2 A:HIS91 4.2 0.0 1.0
H A:PHE73 4.2 0.0 1.0
HA A:TRP90 4.3 0.0 1.0
HB2 A:CYS72 4.3 0.0 1.0
C A:GLY71 4.4 0.0 1.0
H A:CYS94 4.5 0.0 1.0
N A:GLY71 4.5 0.0 1.0
H A:LYS74 4.5 0.0 1.0
CA A:GLY71 4.5 0.0 1.0
HB2 A:LYS74 4.6 0.0 1.0
H A:LYS70 4.6 0.0 1.0
CA A:CYS69 4.7 0.0 1.0
HB3 A:TRP90 4.8 0.0 1.0
N A:PHE73 4.8 0.0 1.0
CA A:CYS94 4.9 0.0 1.0
C A:TRP90 4.9 0.0 1.0
HA A:HIS91 4.9 0.0 1.0
C A:CYS72 4.9 0.0 1.0
HD2 A:LYS74 4.9 0.0 1.0
HA A:CYS72 5.0 0.0 1.0

Reference:

T.N.Niraula, S.Koshiba, M.Inoue, T.Kigawa, S.Yokoyama. Solution Structure of the Skeletal Muscle Lim-Protein 1 To Be Published.
Page generated: Wed Aug 20 01:50:47 2025

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