Zinc in PDB 2ctt: Solution Structure of Zinc Finger Domain From Human Dnaj Subfamily A Menber 3
Zinc Binding Sites:
The binding sites of Zinc atom in the Solution Structure of Zinc Finger Domain From Human Dnaj Subfamily A Menber 3
(pdb code 2ctt). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the
Solution Structure of Zinc Finger Domain From Human Dnaj Subfamily A Menber 3, PDB code: 2ctt:
Jump to Zinc binding site number:
1;
2;
Zinc binding site 1 out
of 2 in 2ctt
Go back to
Zinc Binding Sites List in 2ctt
Zinc binding site 1 out
of 2 in the Solution Structure of Zinc Finger Domain From Human Dnaj Subfamily A Menber 3
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Solution Structure of Zinc Finger Domain From Human Dnaj Subfamily A Menber 3 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn201
b:0.0
occ:1.00
|
SG
|
A:CYS70
|
2.3
|
0.0
|
1.0
|
SG
|
A:CYS51
|
2.3
|
0.0
|
1.0
|
SG
|
A:CYS48
|
2.3
|
0.0
|
1.0
|
SG
|
A:CYS73
|
2.3
|
0.0
|
1.0
|
H
|
A:CYS51
|
2.6
|
0.0
|
1.0
|
HB2
|
A:TYR50
|
2.9
|
0.0
|
1.0
|
HB3
|
A:CYS73
|
3.0
|
0.0
|
1.0
|
HB3
|
A:CYS48
|
3.1
|
0.0
|
1.0
|
H
|
A:CYS73
|
3.2
|
0.0
|
1.0
|
CB
|
A:CYS73
|
3.3
|
0.0
|
1.0
|
CB
|
A:CYS48
|
3.3
|
0.0
|
1.0
|
CB
|
A:CYS70
|
3.3
|
0.0
|
1.0
|
HB3
|
A:CYS70
|
3.4
|
0.0
|
1.0
|
HB2
|
A:CYS70
|
3.4
|
0.0
|
1.0
|
N
|
A:CYS51
|
3.5
|
0.0
|
1.0
|
HB3
|
A:CYS51
|
3.5
|
0.0
|
1.0
|
CB
|
A:CYS51
|
3.5
|
0.0
|
1.0
|
HB3
|
A:TYR50
|
3.6
|
0.0
|
1.0
|
HB2
|
A:ARG72
|
3.7
|
0.0
|
1.0
|
CB
|
A:TYR50
|
3.7
|
0.0
|
1.0
|
HB2
|
A:CYS48
|
3.8
|
0.0
|
1.0
|
N
|
A:CYS73
|
3.9
|
0.0
|
1.0
|
HA2
|
A:GLY77
|
3.9
|
0.0
|
1.0
|
H
|
A:GLY52
|
4.0
|
0.0
|
1.0
|
H
|
A:GLY77
|
4.0
|
0.0
|
1.0
|
CA
|
A:CYS51
|
4.1
|
0.0
|
1.0
|
HB2
|
A:CYS73
|
4.1
|
0.0
|
1.0
|
HA2
|
A:GLY55
|
4.1
|
0.0
|
1.0
|
H
|
A:GLY74
|
4.2
|
0.0
|
1.0
|
CA
|
A:CYS73
|
4.2
|
0.0
|
1.0
|
C
|
A:TYR50
|
4.4
|
0.0
|
1.0
|
HB2
|
A:CYS51
|
4.4
|
0.0
|
1.0
|
CA
|
A:TYR50
|
4.4
|
0.0
|
1.0
|
H
|
A:TYR50
|
4.5
|
0.0
|
1.0
|
H
|
A:GLY75
|
4.5
|
0.0
|
1.0
|
N
|
A:TYR50
|
4.5
|
0.0
|
1.0
|
CA
|
A:CYS48
|
4.6
|
0.0
|
1.0
|
CB
|
A:ARG72
|
4.7
|
0.0
|
1.0
|
CA
|
A:GLY77
|
4.7
|
0.0
|
1.0
|
H
|
A:GLY53
|
4.7
|
0.0
|
1.0
|
H
|
A:GLY55
|
4.7
|
0.0
|
1.0
|
N
|
A:GLY77
|
4.7
|
0.0
|
1.0
|
H
|
A:ARG72
|
4.7
|
0.0
|
1.0
|
H
|
A:ARG76
|
4.8
|
0.0
|
1.0
|
H
|
A:SER78
|
4.8
|
0.0
|
1.0
|
CA
|
A:CYS70
|
4.8
|
0.0
|
1.0
|
N
|
A:GLY52
|
4.8
|
0.0
|
1.0
|
C
|
A:CYS48
|
4.8
|
0.0
|
1.0
|
HB3
|
A:ARG72
|
4.8
|
0.0
|
1.0
|
CG
|
A:TYR50
|
4.9
|
0.0
|
1.0
|
HA
|
A:CYS51
|
4.9
|
0.0
|
1.0
|
C
|
A:ARG72
|
4.9
|
0.0
|
1.0
|
N
|
A:GLY74
|
4.9
|
0.0
|
1.0
|
|
Zinc binding site 2 out
of 2 in 2ctt
Go back to
Zinc Binding Sites List in 2ctt
Zinc binding site 2 out
of 2 in the Solution Structure of Zinc Finger Domain From Human Dnaj Subfamily A Menber 3
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Solution Structure of Zinc Finger Domain From Human Dnaj Subfamily A Menber 3 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn401
b:0.0
occ:1.00
|
SG
|
A:CYS31
|
2.3
|
0.0
|
1.0
|
SG
|
A:CYS87
|
2.3
|
0.0
|
1.0
|
SG
|
A:CYS84
|
2.3
|
0.0
|
1.0
|
SG
|
A:CYS34
|
2.3
|
0.0
|
1.0
|
H
|
A:CYS87
|
2.8
|
0.0
|
1.0
|
HB3
|
A:CYS34
|
3.0
|
0.0
|
1.0
|
HB3
|
A:CYS87
|
3.1
|
0.0
|
1.0
|
H
|
A:CYS34
|
3.1
|
0.0
|
1.0
|
CB
|
A:CYS84
|
3.2
|
0.0
|
1.0
|
CB
|
A:CYS31
|
3.2
|
0.0
|
1.0
|
HB2
|
A:CYS84
|
3.2
|
0.0
|
1.0
|
CB
|
A:CYS34
|
3.2
|
0.0
|
1.0
|
HB3
|
A:CYS31
|
3.3
|
0.0
|
1.0
|
HB3
|
A:CYS84
|
3.3
|
0.0
|
1.0
|
CB
|
A:CYS87
|
3.3
|
0.0
|
1.0
|
HB2
|
A:CYS31
|
3.3
|
0.0
|
1.0
|
HG11
|
A:VAL86
|
3.5
|
0.0
|
1.0
|
HB3
|
A:ARG33
|
3.6
|
0.0
|
1.0
|
HB
|
A:VAL86
|
3.6
|
0.0
|
1.0
|
N
|
A:CYS87
|
3.6
|
0.0
|
1.0
|
N
|
A:CYS34
|
3.7
|
0.0
|
1.0
|
CA
|
A:CYS87
|
4.0
|
0.0
|
1.0
|
H
|
A:VAL86
|
4.1
|
0.0
|
1.0
|
HB2
|
A:CYS34
|
4.1
|
0.0
|
1.0
|
CA
|
A:CYS34
|
4.1
|
0.0
|
1.0
|
HB2
|
A:CYS87
|
4.2
|
0.0
|
1.0
|
HA2
|
A:GLY38
|
4.2
|
0.0
|
1.0
|
H
|
A:GLY38
|
4.3
|
0.0
|
1.0
|
CG1
|
A:VAL86
|
4.3
|
0.0
|
1.0
|
H
|
A:GLY89
|
4.3
|
0.0
|
1.0
|
CB
|
A:VAL86
|
4.4
|
0.0
|
1.0
|
HG13
|
A:VAL86
|
4.4
|
0.0
|
1.0
|
H
|
A:ARG33
|
4.5
|
0.0
|
1.0
|
H
|
A:GLY91
|
4.5
|
0.0
|
1.0
|
CB
|
A:ARG33
|
4.5
|
0.0
|
1.0
|
H
|
A:GLY36
|
4.5
|
0.0
|
1.0
|
H
|
A:ARG88
|
4.6
|
0.0
|
1.0
|
C
|
A:VAL86
|
4.6
|
0.0
|
1.0
|
H
|
A:ASN35
|
4.6
|
0.0
|
1.0
|
CA
|
A:CYS84
|
4.7
|
0.0
|
1.0
|
CA
|
A:CYS31
|
4.7
|
0.0
|
1.0
|
C
|
A:ARG33
|
4.7
|
0.0
|
1.0
|
HB2
|
A:ARG33
|
4.8
|
0.0
|
1.0
|
H
|
A:GLU32
|
4.8
|
0.0
|
1.0
|
H
|
A:ASN39
|
4.8
|
0.0
|
1.0
|
N
|
A:VAL86
|
4.8
|
0.0
|
1.0
|
C
|
A:CYS87
|
4.8
|
0.0
|
1.0
|
CA
|
A:VAL86
|
4.9
|
0.0
|
1.0
|
H
|
A:ALA90
|
4.9
|
0.0
|
1.0
|
HA
|
A:CYS87
|
4.9
|
0.0
|
1.0
|
H
|
A:LYS37
|
4.9
|
0.0
|
1.0
|
N
|
A:ARG33
|
4.9
|
0.0
|
1.0
|
HA
|
A:CYS34
|
4.9
|
0.0
|
1.0
|
HA
|
A:CYS84
|
5.0
|
0.0
|
1.0
|
C
|
A:CYS34
|
5.0
|
0.0
|
1.0
|
N
|
A:GLY38
|
5.0
|
0.0
|
1.0
|
CA
|
A:ARG33
|
5.0
|
0.0
|
1.0
|
HA
|
A:CYS31
|
5.0
|
0.0
|
1.0
|
N
|
A:ARG88
|
5.0
|
0.0
|
1.0
|
|
Reference:
N.Kobayashi,
N.Tochio,
K.Saito,
S.Koshiba,
M.Inoue,
T.Kigawa,
S.Yokoyama.
Solution Structure of Zinc Finger Domain From Human Dnaj Subfamily A Menber 3 To Be Published.
Page generated: Wed Oct 16 22:32:43 2024
|