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Zinc in PDB 2ctt: Solution Structure of Zinc Finger Domain From Human Dnaj Subfamily A Menber 3

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution Structure of Zinc Finger Domain From Human Dnaj Subfamily A Menber 3 (pdb code 2ctt). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of Zinc Finger Domain From Human Dnaj Subfamily A Menber 3, PDB code: 2ctt:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2ctt

Go back to Zinc Binding Sites List in 2ctt
Zinc binding site 1 out of 2 in the Solution Structure of Zinc Finger Domain From Human Dnaj Subfamily A Menber 3


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of Zinc Finger Domain From Human Dnaj Subfamily A Menber 3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:0.0
occ:1.00
SG A:CYS70 2.3 0.0 1.0
SG A:CYS51 2.3 0.0 1.0
SG A:CYS48 2.3 0.0 1.0
SG A:CYS73 2.3 0.0 1.0
H A:CYS51 2.6 0.0 1.0
HB2 A:TYR50 2.9 0.0 1.0
HB3 A:CYS73 3.0 0.0 1.0
HB3 A:CYS48 3.1 0.0 1.0
H A:CYS73 3.2 0.0 1.0
CB A:CYS73 3.3 0.0 1.0
CB A:CYS48 3.3 0.0 1.0
CB A:CYS70 3.3 0.0 1.0
HB3 A:CYS70 3.4 0.0 1.0
HB2 A:CYS70 3.4 0.0 1.0
N A:CYS51 3.5 0.0 1.0
HB3 A:CYS51 3.5 0.0 1.0
CB A:CYS51 3.5 0.0 1.0
HB3 A:TYR50 3.6 0.0 1.0
HB2 A:ARG72 3.7 0.0 1.0
CB A:TYR50 3.7 0.0 1.0
HB2 A:CYS48 3.8 0.0 1.0
N A:CYS73 3.9 0.0 1.0
HA2 A:GLY77 3.9 0.0 1.0
H A:GLY52 4.0 0.0 1.0
H A:GLY77 4.0 0.0 1.0
CA A:CYS51 4.1 0.0 1.0
HB2 A:CYS73 4.1 0.0 1.0
HA2 A:GLY55 4.1 0.0 1.0
H A:GLY74 4.2 0.0 1.0
CA A:CYS73 4.2 0.0 1.0
C A:TYR50 4.4 0.0 1.0
HB2 A:CYS51 4.4 0.0 1.0
CA A:TYR50 4.4 0.0 1.0
H A:TYR50 4.5 0.0 1.0
H A:GLY75 4.5 0.0 1.0
N A:TYR50 4.5 0.0 1.0
CA A:CYS48 4.6 0.0 1.0
CB A:ARG72 4.7 0.0 1.0
CA A:GLY77 4.7 0.0 1.0
H A:GLY53 4.7 0.0 1.0
H A:GLY55 4.7 0.0 1.0
N A:GLY77 4.7 0.0 1.0
H A:ARG72 4.7 0.0 1.0
H A:ARG76 4.8 0.0 1.0
H A:SER78 4.8 0.0 1.0
CA A:CYS70 4.8 0.0 1.0
N A:GLY52 4.8 0.0 1.0
C A:CYS48 4.8 0.0 1.0
HB3 A:ARG72 4.8 0.0 1.0
CG A:TYR50 4.9 0.0 1.0
HA A:CYS51 4.9 0.0 1.0
C A:ARG72 4.9 0.0 1.0
N A:GLY74 4.9 0.0 1.0

Zinc binding site 2 out of 2 in 2ctt

Go back to Zinc Binding Sites List in 2ctt
Zinc binding site 2 out of 2 in the Solution Structure of Zinc Finger Domain From Human Dnaj Subfamily A Menber 3


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of Zinc Finger Domain From Human Dnaj Subfamily A Menber 3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:0.0
occ:1.00
SG A:CYS31 2.3 0.0 1.0
SG A:CYS87 2.3 0.0 1.0
SG A:CYS84 2.3 0.0 1.0
SG A:CYS34 2.3 0.0 1.0
H A:CYS87 2.8 0.0 1.0
HB3 A:CYS34 3.0 0.0 1.0
HB3 A:CYS87 3.1 0.0 1.0
H A:CYS34 3.1 0.0 1.0
CB A:CYS84 3.2 0.0 1.0
CB A:CYS31 3.2 0.0 1.0
HB2 A:CYS84 3.2 0.0 1.0
CB A:CYS34 3.2 0.0 1.0
HB3 A:CYS31 3.3 0.0 1.0
HB3 A:CYS84 3.3 0.0 1.0
CB A:CYS87 3.3 0.0 1.0
HB2 A:CYS31 3.3 0.0 1.0
HG11 A:VAL86 3.5 0.0 1.0
HB3 A:ARG33 3.6 0.0 1.0
HB A:VAL86 3.6 0.0 1.0
N A:CYS87 3.6 0.0 1.0
N A:CYS34 3.7 0.0 1.0
CA A:CYS87 4.0 0.0 1.0
H A:VAL86 4.1 0.0 1.0
HB2 A:CYS34 4.1 0.0 1.0
CA A:CYS34 4.1 0.0 1.0
HB2 A:CYS87 4.2 0.0 1.0
HA2 A:GLY38 4.2 0.0 1.0
H A:GLY38 4.3 0.0 1.0
CG1 A:VAL86 4.3 0.0 1.0
H A:GLY89 4.3 0.0 1.0
CB A:VAL86 4.4 0.0 1.0
HG13 A:VAL86 4.4 0.0 1.0
H A:ARG33 4.5 0.0 1.0
H A:GLY91 4.5 0.0 1.0
CB A:ARG33 4.5 0.0 1.0
H A:GLY36 4.5 0.0 1.0
H A:ARG88 4.6 0.0 1.0
C A:VAL86 4.6 0.0 1.0
H A:ASN35 4.6 0.0 1.0
CA A:CYS84 4.7 0.0 1.0
CA A:CYS31 4.7 0.0 1.0
C A:ARG33 4.7 0.0 1.0
HB2 A:ARG33 4.8 0.0 1.0
H A:GLU32 4.8 0.0 1.0
H A:ASN39 4.8 0.0 1.0
N A:VAL86 4.8 0.0 1.0
C A:CYS87 4.8 0.0 1.0
CA A:VAL86 4.9 0.0 1.0
H A:ALA90 4.9 0.0 1.0
HA A:CYS87 4.9 0.0 1.0
H A:LYS37 4.9 0.0 1.0
N A:ARG33 4.9 0.0 1.0
HA A:CYS34 4.9 0.0 1.0
HA A:CYS84 5.0 0.0 1.0
C A:CYS34 5.0 0.0 1.0
N A:GLY38 5.0 0.0 1.0
CA A:ARG33 5.0 0.0 1.0
HA A:CYS31 5.0 0.0 1.0
N A:ARG88 5.0 0.0 1.0

Reference:

N.Kobayashi, N.Tochio, K.Saito, S.Koshiba, M.Inoue, T.Kigawa, S.Yokoyama. Solution Structure of Zinc Finger Domain From Human Dnaj Subfamily A Menber 3 To Be Published.
Page generated: Wed Aug 20 01:50:30 2025

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