Atomistry » Zinc » PDB 2c6p-2ci7 » 2cfz
Atomistry »
  Zinc »
    PDB 2c6p-2ci7 »
      2cfz »

Zinc in PDB 2cfz: Crystal Structure of SDSA1, An Alkylsulfatase From Pseudomonas Aeruginosa, in Complex with 1-Dodecanol

Protein crystallography data

The structure of Crystal Structure of SDSA1, An Alkylsulfatase From Pseudomonas Aeruginosa, in Complex with 1-Dodecanol, PDB code: 2cfz was solved by G.Hagelueken, T.M.Adams, L.Wiehlmann, U.Widow, H.Kolmar, B.Tuemmler, D.W.Heinz, W.-D.Schubert, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 74.74 / 2.05
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 86.323, 86.323, 367.594, 90.00, 90.00, 120.00
R / Rfree (%) 16 / 21

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of SDSA1, An Alkylsulfatase From Pseudomonas Aeruginosa, in Complex with 1-Dodecanol (pdb code 2cfz). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of SDSA1, An Alkylsulfatase From Pseudomonas Aeruginosa, in Complex with 1-Dodecanol, PDB code: 2cfz:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2cfz

Go back to Zinc Binding Sites List in 2cfz
Zinc binding site 1 out of 2 in the Crystal Structure of SDSA1, An Alkylsulfatase From Pseudomonas Aeruginosa, in Complex with 1-Dodecanol


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of SDSA1, An Alkylsulfatase From Pseudomonas Aeruginosa, in Complex with 1-Dodecanol within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1001

b:13.1
occ:1.00
NE2 A:HIS174 2.0 22.1 1.0
OE2 A:GLU299 2.1 21.8 1.0
O A:HOH3001 2.1 15.7 1.0
NE2 A:HIS344 2.1 21.2 1.0
OD2 A:ASP173 2.1 25.7 1.0
CD A:GLU299 2.9 24.8 1.0
CD2 A:HIS174 3.0 23.4 1.0
CG A:ASP173 3.0 26.0 1.0
OE1 A:GLU299 3.0 25.5 1.0
CE1 A:HIS174 3.0 22.9 1.0
CD2 A:HIS344 3.1 16.7 1.0
CE1 A:HIS344 3.1 17.5 1.0
OD1 A:ASP173 3.3 23.0 1.0
ZN A:ZN1002 3.3 17.0 1.0
O A:HOH2329 3.5 36.5 1.0
NE2 A:HIS169 4.1 24.0 1.0
CE1 A:HIS169 4.1 22.1 1.0
CG A:HIS174 4.1 23.7 1.0
ND1 A:HIS174 4.1 24.3 1.0
ND1 A:HIS344 4.2 16.4 1.0
CG A:HIS344 4.3 19.8 1.0
CG A:GLU299 4.3 23.5 1.0
CB A:ASP173 4.4 24.4 1.0
OE2 A:GLU280 4.4 25.0 1.0
CD1 A:ILE239 4.4 21.5 1.0
CB A:ALA123 4.7 16.9 1.0
CG2 A:VAL343 4.7 19.9 1.0
CB A:GLU299 4.9 25.0 1.0

Zinc binding site 2 out of 2 in 2cfz

Go back to Zinc Binding Sites List in 2cfz
Zinc binding site 2 out of 2 in the Crystal Structure of SDSA1, An Alkylsulfatase From Pseudomonas Aeruginosa, in Complex with 1-Dodecanol


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of SDSA1, An Alkylsulfatase From Pseudomonas Aeruginosa, in Complex with 1-Dodecanol within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1002

b:17.0
occ:1.00
O A:HOH3001 2.0 15.7 1.0
OE2 A:GLU280 2.0 25.0 1.0
NE2 A:HIS169 2.1 24.0 1.0
ND1 A:HIS171 2.1 20.7 1.0
OE2 A:GLU299 2.8 21.8 1.0
CD A:GLU280 2.8 27.6 1.0
OE1 A:GLU280 3.0 24.0 1.0
CD2 A:HIS169 3.0 22.5 1.0
CE1 A:HIS171 3.1 26.9 1.0
CE1 A:HIS169 3.1 22.1 1.0
CG A:HIS171 3.1 22.3 1.0
CD A:GLU299 3.3 24.8 1.0
ZN A:ZN1001 3.3 13.1 1.0
CB A:HIS171 3.5 17.2 1.0
OE1 A:GLU299 3.6 25.5 1.0
O A:HOH2329 3.6 36.5 1.0
O A:HOH2317 3.7 27.1 1.0
NE2 A:HIS174 3.9 22.1 1.0
CD2 A:HIS174 4.0 23.4 1.0
CG A:HIS169 4.2 24.8 1.0
ND1 A:HIS169 4.2 18.8 1.0
NE2 A:HIS171 4.2 27.4 1.0
CD2 A:HIS171 4.2 27.9 1.0
CG A:GLU299 4.3 23.5 1.0
OD1 A:ASP173 4.3 23.0 1.0
CB A:GLU299 4.3 25.0 1.0
CG A:GLU280 4.3 19.8 1.0
O2S A:1DO1655 4.4 31.9 0.5
OD2 A:ASP173 4.7 25.7 1.0
C1 A:1DO1655 4.8 39.2 0.5
CA A:HIS171 4.9 21.4 1.0
CG A:ASP173 4.9 26.0 1.0

Reference:

G.Hagelueken, T.M.Adams, L.Wiehlmann, U.Widow, H.Kolmar, B.Tummler, D.W.Heinz, W.-D.Schubert. The Crystal Structure of SDSA1, An Alkylsulfatase From Pseudomonas Aeruginosa, Defines A Third Class of Sulfatases. Proc.Natl.Acad.Sci.Usa V. 103 7631 2006.
ISSN: ISSN 0027-8424
PubMed: 16684886
DOI: 10.1073/PNAS.0510501103
Page generated: Wed Dec 16 03:19:14 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy