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Zinc in PDB 2ayd: Crystal Structure of the C-Terminal Wrky Domainof ATWRKY1, An Sa- Induced and Partially NPR1-Dependent Transcription Factor

Protein crystallography data

The structure of Crystal Structure of the C-Terminal Wrky Domainof ATWRKY1, An Sa- Induced and Partially NPR1-Dependent Transcription Factor, PDB code: 2ayd was solved by M.R.Duan, J.Nan, Y.Li, X.D.Su, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.60
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 45.552, 45.552, 68.962, 90.00, 90.00, 120.00
R / Rfree (%) 17.9 / 20.4

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of the C-Terminal Wrky Domainof ATWRKY1, An Sa- Induced and Partially NPR1-Dependent Transcription Factor (pdb code 2ayd). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of the C-Terminal Wrky Domainof ATWRKY1, An Sa- Induced and Partially NPR1-Dependent Transcription Factor, PDB code: 2ayd:

Zinc binding site 1 out of 1 in 2ayd

Go back to Zinc Binding Sites List in 2ayd
Zinc binding site 1 out of 1 in the Crystal Structure of the C-Terminal Wrky Domainof ATWRKY1, An Sa- Induced and Partially NPR1-Dependent Transcription Factor


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the C-Terminal Wrky Domainof ATWRKY1, An Sa- Induced and Partially NPR1-Dependent Transcription Factor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn369

b:16.1
occ:1.00
ND1 A:HIS361 2.1 13.9 1.0
NE2 A:HIS363 2.1 11.0 1.0
SG A:CYS337 2.3 13.6 1.0
SG A:CYS332 2.3 13.3 1.0
CE1 A:HIS361 2.9 14.2 1.0
CD2 A:HIS363 3.0 13.1 1.0
CE1 A:HIS363 3.1 12.1 1.0
CB A:CYS337 3.1 14.7 1.0
CG A:HIS361 3.2 15.1 1.0
CB A:CYS332 3.2 13.8 1.0
CB A:HIS361 3.7 15.9 1.0
CA A:HIS361 4.0 16.1 1.0
NE2 A:HIS361 4.1 17.1 1.0
CB A:SER334 4.1 12.8 1.0
CG A:HIS363 4.2 12.5 1.0
ND1 A:HIS363 4.2 11.9 1.0
CD2 A:HIS361 4.2 15.8 1.0
CG2 A:VAL339 4.3 14.2 1.0
CB A:VAL339 4.3 14.5 1.0
O A:HOH602 4.4 13.5 1.0
CA A:CYS337 4.6 15.0 1.0
CA A:CYS332 4.7 13.6 1.0
CD1 A:TYR310 4.7 16.3 1.0
N A:ASP362 4.8 16.4 1.0
OG A:SER334 4.9 13.6 1.0
C A:HIS361 5.0 15.4 1.0
N A:VAL339 5.0 14.4 1.0

Reference:

M.R.Duan, J.Nan, Y.H.Liang, P.Mao, L.Lu, L.Li, C.Wei, L.Lai, Y.Li, X.D.Su. Dna Binding Mechanism Revealed By High Resolution Crystal Structure of Arabidopsis Thaliana WRKY1 Protein. Nucleic Acids Res. V. 35 1145 2007.
ISSN: ISSN 0305-1048
PubMed: 17264121
DOI: 10.1093/NAR/GKM001
Page generated: Wed Dec 16 03:17:56 2020

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