Atomistry » Zinc » PDB 2af2-2aqp » 2aps
Atomistry »
  Zinc »
    PDB 2af2-2aqp »
      2aps »

Zinc in PDB 2aps: Cu/Zn Superoxide Dismutase From Actinobacillus Pleuropneumoniae

Protein crystallography data

The structure of Cu/Zn Superoxide Dismutase From Actinobacillus Pleuropneumoniae, PDB code: 2aps was solved by K.T.Forest, P.R.Langford, J.S.Kroll, E.D.Getzoff, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.90
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 58.050, 123.880, 107.250, 90.00, 90.00, 90.00
R / Rfree (%) 22.1 / 26.1

Other elements in 2aps:

The structure of Cu/Zn Superoxide Dismutase From Actinobacillus Pleuropneumoniae also contains other interesting chemical elements:

Copper (Cu) 4 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Cu/Zn Superoxide Dismutase From Actinobacillus Pleuropneumoniae (pdb code 2aps). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Cu/Zn Superoxide Dismutase From Actinobacillus Pleuropneumoniae, PDB code: 2aps:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2aps

Go back to Zinc Binding Sites List in 2aps
Zinc binding site 1 out of 2 in the Cu/Zn Superoxide Dismutase From Actinobacillus Pleuropneumoniae


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cu/Zn Superoxide Dismutase From Actinobacillus Pleuropneumoniae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn400

b:30.1
occ:1.00
OD1 A:ASP106 2.0 27.3 1.0
ND1 A:HIS94 2.1 26.3 1.0
ND1 A:HIS85 2.1 37.6 1.0
ND1 A:HIS103 2.2 34.8 1.0
CG A:ASP106 2.8 25.9 1.0
CE1 A:HIS94 2.9 23.9 1.0
OD2 A:ASP106 2.9 25.2 1.0
CE1 A:HIS85 3.0 38.1 1.0
CE1 A:HIS103 3.1 34.9 1.0
CG A:HIS85 3.2 39.1 1.0
CG A:HIS103 3.2 34.4 1.0
CG A:HIS94 3.2 25.6 1.0
CB A:HIS103 3.5 32.2 1.0
CB A:HIS85 3.6 42.9 1.0
CB A:HIS94 3.7 27.2 1.0
CA A:HIS94 3.9 28.4 1.0
NE2 A:HIS94 4.1 21.2 1.0
NE2 A:HIS85 4.2 39.7 1.0
NE2 A:HIS103 4.2 33.3 1.0
CB A:ASP106 4.2 24.3 1.0
CD2 A:HIS94 4.3 23.4 1.0
CD2 A:HIS85 4.3 37.1 1.0
CD2 A:HIS103 4.3 32.2 1.0
CD1 A:LEU154 4.3 33.6 1.0
CD2 A:HIS60 4.7 34.7 1.0
CA A:ASP106 4.7 26.0 1.0
CA A:HIS103 4.8 33.0 1.0
N A:GLY95 4.8 26.3 1.0
N A:HIS103 4.9 32.5 1.0
N A:HIS94 4.9 31.9 1.0
C A:HIS94 4.9 25.4 1.0
N A:ASP106 4.9 29.9 1.0

Zinc binding site 2 out of 2 in 2aps

Go back to Zinc Binding Sites List in 2aps
Zinc binding site 2 out of 2 in the Cu/Zn Superoxide Dismutase From Actinobacillus Pleuropneumoniae


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cu/Zn Superoxide Dismutase From Actinobacillus Pleuropneumoniae within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn600

b:26.0
occ:1.00
OD1 B:ASP106 2.0 26.5 1.0
ND1 B:HIS103 2.0 22.5 1.0
ND1 B:HIS85 2.1 21.4 1.0
ND1 B:HIS94 2.1 25.9 1.0
CG B:ASP106 2.8 26.1 1.0
CE1 B:HIS103 2.9 23.9 1.0
OD2 B:ASP106 2.9 23.9 1.0
CE1 B:HIS94 3.0 26.5 1.0
CE1 B:HIS85 3.0 20.4 1.0
CG B:HIS103 3.1 21.6 1.0
CG B:HIS85 3.1 22.1 1.0
CG B:HIS94 3.2 28.0 1.0
CB B:HIS85 3.5 19.7 1.0
CB B:HIS103 3.6 24.5 1.0
CB B:HIS94 3.7 28.2 1.0
CA B:HIS94 3.8 28.4 1.0
NE2 B:HIS103 4.0 19.9 1.0
NE2 B:HIS85 4.1 20.6 1.0
NE2 B:HIS94 4.1 23.3 1.0
CD2 B:HIS103 4.2 22.9 1.0
CD2 B:HIS85 4.2 21.7 1.0
CB B:ASP106 4.3 22.6 1.0
CD2 B:HIS94 4.3 24.7 1.0
CD2 B:LEU154 4.4 25.0 1.0
CA B:HIS103 4.8 24.3 1.0
CA B:ASP106 4.8 24.6 1.0
N B:HIS103 4.8 26.0 1.0
N B:GLY95 4.8 25.6 1.0
N B:HIS94 4.8 27.7 1.0
CD2 B:HIS60 4.9 19.6 1.0
C B:HIS94 4.9 28.1 1.0
O B:GLN93 4.9 27.3 1.0
N B:ASP106 5.0 21.5 1.0

Reference:

K.T.Forest, P.R.Langford, J.S.Kroll, E.D.Getzoff. Cu,Zn Superoxide Dismutase Structure From A Microbial Pathogen Establishes A Class with A Conserved Dimer Interface. J.Mol.Biol. V. 296 145 2000.
ISSN: ISSN 0022-2836
PubMed: 10656823
DOI: 10.1006/JMBI.1999.3448
Page generated: Wed Dec 16 03:17:44 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy