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Zinc in PDB 2anu: Crystal Structure of Predicted Metal-Dependent Phosphoesterase (Php Family) (TM0559) From Thermotoga Maritima at 2.40 A Resolution

Protein crystallography data

The structure of Crystal Structure of Predicted Metal-Dependent Phosphoesterase (Php Family) (TM0559) From Thermotoga Maritima at 2.40 A Resolution, PDB code: 2anu was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.00 / 2.40
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 111.307, 111.307, 383.222, 90.00, 90.00, 120.00
R / Rfree (%) 16.9 / 22

Other elements in 2anu:

The structure of Crystal Structure of Predicted Metal-Dependent Phosphoesterase (Php Family) (TM0559) From Thermotoga Maritima at 2.40 A Resolution also contains other interesting chemical elements:

Chlorine (Cl) 15 atoms

Zinc Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 24;

Binding sites:

The binding sites of Zinc atom in the Crystal Structure of Predicted Metal-Dependent Phosphoesterase (Php Family) (TM0559) From Thermotoga Maritima at 2.40 A Resolution (pdb code 2anu). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 24 binding sites of Zinc where determined in the Crystal Structure of Predicted Metal-Dependent Phosphoesterase (Php Family) (TM0559) From Thermotoga Maritima at 2.40 A Resolution, PDB code: 2anu:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Zinc binding site 1 out of 24 in 2anu

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Zinc binding site 1 out of 24 in the Crystal Structure of Predicted Metal-Dependent Phosphoesterase (Php Family) (TM0559) From Thermotoga Maritima at 2.40 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Predicted Metal-Dependent Phosphoesterase (Php Family) (TM0559) From Thermotoga Maritima at 2.40 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn405

b:32.7
occ:1.00
OE1 A:GLU97 2.1 33.5 1.0
NE2 A:HIS13 2.2 30.6 1.0
NE2 A:HIS15 2.3 31.9 1.0
OD1 A:ASP193 2.5 27.9 1.0
CE1 A:HIS13 3.0 27.8 1.0
CL A:CL1001 3.1 25.7 1.0
CE1 A:HIS15 3.1 31.7 1.0
CD A:GLU97 3.1 26.0 1.0
CD2 A:HIS13 3.2 32.1 1.0
CD2 A:HIS15 3.2 25.2 1.0
ZN A:ZN705 3.4 67.2 1.0
CG A:ASP193 3.5 25.6 1.0
OE2 A:GLU97 3.5 36.6 1.0
CL A:CL1002 3.9 33.1 1.0
ZN A:ZN605 4.0 46.2 1.0
CE1 A:HIS195 4.0 31.8 1.0
CE1 A:HIS45 4.0 29.8 1.0
OD2 A:ASP193 4.0 36.6 1.0
ND1 A:HIS13 4.2 28.5 1.0
ND1 A:HIS15 4.2 29.4 1.0
NE2 A:HIS45 4.2 29.8 1.0
CG A:HIS13 4.3 28.8 1.0
CG A:HIS15 4.3 24.7 1.0
ZN A:ZN505 4.3 29.2 1.0
CG A:GLU97 4.4 31.2 1.0
CB A:ASP193 4.5 27.3 1.0
NE2 A:HIS195 4.5 30.2 1.0
CA A:ASP193 4.7 25.4 1.0
CB A:GLU97 4.9 28.4 1.0
O A:HOH1055 5.0 23.9 1.0

Zinc binding site 2 out of 24 in 2anu

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Zinc binding site 2 out of 24 in the Crystal Structure of Predicted Metal-Dependent Phosphoesterase (Php Family) (TM0559) From Thermotoga Maritima at 2.40 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Predicted Metal-Dependent Phosphoesterase (Php Family) (TM0559) From Thermotoga Maritima at 2.40 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn505

b:29.2
occ:1.00
O A:HOH1055 2.2 23.9 1.0
NE2 A:HIS195 2.2 30.2 1.0
NE2 A:HIS45 2.2 29.8 1.0
OD2 A:ASP20 2.3 32.2 1.0
OD1 A:ASP20 2.4 26.2 1.0
CG A:ASP20 2.7 28.1 1.0
CL A:CL1001 3.0 25.7 1.0
CD2 A:HIS45 3.1 25.9 1.0
CE1 A:HIS195 3.2 31.8 1.0
CD2 A:HIS195 3.2 30.9 1.0
CE1 A:HIS45 3.2 29.8 1.0
CB A:ASP20 4.2 25.6 1.0
CE1 A:HIS15 4.2 31.7 1.0
NE2 A:HIS15 4.2 31.9 1.0
ND1 A:HIS15 4.2 29.4 1.0
CD2 A:HIS15 4.2 25.2 1.0
CG A:HIS15 4.2 24.7 1.0
ND1 A:HIS195 4.3 25.3 1.0
CG A:HIS45 4.3 30.2 1.0
ND1 A:HIS45 4.3 31.5 1.0
ZN A:ZN405 4.3 32.7 1.0
CG A:HIS195 4.4 28.6 1.0
CB A:HIS15 4.9 28.0 1.0
O A:ASP20 5.0 28.5 1.0
O A:HOH1041 5.0 29.1 1.0
OE1 A:GLU97 5.0 33.5 1.0

Zinc binding site 3 out of 24 in 2anu

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Zinc binding site 3 out of 24 in the Crystal Structure of Predicted Metal-Dependent Phosphoesterase (Php Family) (TM0559) From Thermotoga Maritima at 2.40 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of Predicted Metal-Dependent Phosphoesterase (Php Family) (TM0559) From Thermotoga Maritima at 2.40 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn605

b:46.2
occ:1.00
OD2 A:ASP193 2.0 36.6 1.0
OD1 A:ASP142 2.4 39.1 1.0
CG A:ASP193 3.0 25.6 1.0
CL A:CL1001 3.0 25.7 1.0
CL A:CL1002 3.0 33.1 1.0
OD1 A:ASP193 3.2 27.9 1.0
CG A:ASP142 3.4 45.5 1.0
CB A:ASP142 3.9 44.5 1.0
ZN A:ZN705 3.9 67.2 1.0
ZN A:ZN405 4.0 32.7 1.0
NH2 A:ARG174 4.0 34.7 1.0
N A:ASP142 4.1 43.4 1.0
CB A:ASP193 4.3 27.3 1.0
CE1 A:HIS195 4.4 31.8 1.0
OD2 A:ASP142 4.5 51.4 1.0
CA A:ASP142 4.6 45.1 1.0
O A:HOH1055 4.7 23.9 1.0
CZ A:ARG174 4.9 33.3 1.0

Zinc binding site 4 out of 24 in 2anu

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Zinc binding site 4 out of 24 in the Crystal Structure of Predicted Metal-Dependent Phosphoesterase (Php Family) (TM0559) From Thermotoga Maritima at 2.40 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of Predicted Metal-Dependent Phosphoesterase (Php Family) (TM0559) From Thermotoga Maritima at 2.40 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn705

b:67.2
occ:1.00
ND1 A:HIS106 2.3 38.6 1.0
OE2 A:GLU97 2.3 36.6 1.0
CL A:CL1002 2.6 33.1 1.0
CL A:CL1001 2.9 25.7 1.0
CE1 A:HIS106 3.1 33.6 1.0
CD A:GLU97 3.2 26.0 1.0
CG A:HIS106 3.4 27.4 1.0
ZN A:ZN405 3.4 32.7 1.0
OE1 A:GLU97 3.4 33.5 1.0
CB A:HIS106 3.8 27.1 1.0
ZN A:ZN605 3.9 46.2 1.0
CE1 A:HIS45 4.2 29.8 1.0
NE2 A:HIS106 4.3 35.2 1.0
CD2 A:HIS106 4.4 37.1 1.0
CG A:GLU97 4.6 31.2 1.0
NE2 A:HIS13 4.6 30.6 1.0
CE1 A:HIS13 4.6 27.8 1.0
O A:HOH1055 4.8 23.9 1.0

Zinc binding site 5 out of 24 in 2anu

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Zinc binding site 5 out of 24 in the Crystal Structure of Predicted Metal-Dependent Phosphoesterase (Php Family) (TM0559) From Thermotoga Maritima at 2.40 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Crystal Structure of Predicted Metal-Dependent Phosphoesterase (Php Family) (TM0559) From Thermotoga Maritima at 2.40 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn405

b:40.0
occ:1.00
OE1 B:GLU97 2.1 33.2 1.0
NE2 B:HIS15 2.2 30.8 1.0
NE2 B:HIS13 2.2 32.6 1.0
OD1 B:ASP193 2.3 30.0 1.0
CE1 B:HIS15 3.0 32.6 1.0
CE1 B:HIS13 3.0 30.6 1.0
CD B:GLU97 3.1 27.4 1.0
CG B:ASP193 3.3 27.1 1.0
CD2 B:HIS13 3.3 32.5 1.0
CL B:CL1003 3.3 27.7 1.0
CD2 B:HIS15 3.3 30.5 1.0
OE2 B:GLU97 3.5 43.2 1.0
ZN B:ZN705 3.6 79.6 1.0
OD2 B:ASP193 3.8 35.6 1.0
CE1 B:HIS195 3.9 29.5 1.0
CL B:CL1004 3.9 41.4 1.0
ZN B:ZN605 3.9 63.0 1.0
CE1 B:HIS45 4.0 29.9 1.0
ND1 B:HIS13 4.1 28.5 1.0
ND1 B:HIS15 4.2 30.6 1.0
NE2 B:HIS45 4.3 28.2 1.0
CG B:HIS13 4.3 27.8 1.0
ZN B:ZN505 4.3 30.2 1.0
CG B:HIS15 4.4 27.9 1.0
NE2 B:HIS195 4.4 28.6 1.0
CG B:GLU97 4.5 31.3 1.0
CB B:ASP193 4.5 26.9 1.0
CA B:ASP193 4.8 25.9 1.0
CB B:GLU97 4.8 27.9 1.0
ND1 B:HIS195 5.0 25.8 1.0
ND1 B:HIS45 5.0 29.6 1.0

Zinc binding site 6 out of 24 in 2anu

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Zinc binding site 6 out of 24 in the Crystal Structure of Predicted Metal-Dependent Phosphoesterase (Php Family) (TM0559) From Thermotoga Maritima at 2.40 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Crystal Structure of Predicted Metal-Dependent Phosphoesterase (Php Family) (TM0559) From Thermotoga Maritima at 2.40 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn505

b:30.2
occ:1.00
OD2 B:ASP20 2.0 31.1 1.0
NE2 B:HIS195 2.0 28.6 1.0
NE2 B:HIS45 2.1 28.2 1.0
CG B:ASP20 2.6 27.7 1.0
OD1 B:ASP20 2.6 24.6 1.0
CL B:CL1003 3.0 27.7 1.0
CD2 B:HIS195 3.0 30.9 1.0
CE1 B:HIS195 3.0 29.5 1.0
CD2 B:HIS45 3.0 26.1 1.0
CE1 B:HIS45 3.1 29.9 1.0
NE2 B:HIS15 4.0 30.8 1.0
CE1 B:HIS15 4.0 32.6 1.0
ND1 B:HIS195 4.1 25.8 1.0
CB B:ASP20 4.1 27.0 1.0
CG B:HIS195 4.1 26.8 1.0
ND1 B:HIS15 4.1 30.6 1.0
CD2 B:HIS15 4.2 30.5 1.0
ND1 B:HIS45 4.2 29.6 1.0
CG B:HIS45 4.2 27.9 1.0
CG B:HIS15 4.3 27.9 1.0
ZN B:ZN405 4.3 40.0 1.0
O B:HOH1019 4.9 24.9 1.0

Zinc binding site 7 out of 24 in 2anu

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Zinc binding site 7 out of 24 in the Crystal Structure of Predicted Metal-Dependent Phosphoesterase (Php Family) (TM0559) From Thermotoga Maritima at 2.40 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Crystal Structure of Predicted Metal-Dependent Phosphoesterase (Php Family) (TM0559) From Thermotoga Maritima at 2.40 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn605

b:63.0
occ:1.00
OD2 B:ASP193 2.1 35.6 1.0
CL B:CL1003 3.0 27.7 1.0
CL B:CL1004 3.0 41.4 1.0
CG B:ASP193 3.1 27.1 1.0
OD2 B:ASP142 3.5 48.9 1.0
OD1 B:ASP193 3.5 30.0 1.0
CB B:ASP142 3.9 46.4 1.0
ZN B:ZN405 3.9 40.0 1.0
ZN B:ZN705 3.9 79.6 1.0
CG B:ASP142 4.1 45.2 1.0
N B:ASP142 4.2 44.0 1.0
NH2 B:ARG174 4.3 33.6 1.0
CE1 B:HIS195 4.4 29.5 1.0
CB B:ASP193 4.4 26.9 1.0
CA B:ASP142 4.7 45.6 1.0

Zinc binding site 8 out of 24 in 2anu

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Zinc binding site 8 out of 24 in the Crystal Structure of Predicted Metal-Dependent Phosphoesterase (Php Family) (TM0559) From Thermotoga Maritima at 2.40 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Crystal Structure of Predicted Metal-Dependent Phosphoesterase (Php Family) (TM0559) From Thermotoga Maritima at 2.40 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn705

b:79.6
occ:1.00
ND1 B:HIS106 2.1 36.0 1.0
OE2 B:GLU97 2.2 43.2 1.0
CL B:CL1004 2.7 41.4 1.0
CE1 B:HIS106 3.0 32.3 1.0
CL B:CL1003 3.0 27.7 1.0
CD B:GLU97 3.2 27.4 1.0
CG B:HIS106 3.3 30.0 1.0
OE1 B:GLU97 3.6 33.2 1.0
ZN B:ZN405 3.6 40.0 1.0
CB B:HIS106 3.7 27.5 1.0
ZN B:ZN605 3.9 63.0 1.0
CE1 B:HIS45 4.1 29.9 1.0
NE2 B:HIS106 4.1 34.9 1.0
CD2 B:HIS106 4.3 36.0 1.0
CG B:GLU97 4.5 31.3 1.0
CE1 B:HIS13 4.9 30.6 1.0
NE2 B:HIS13 4.9 32.6 1.0
ND1 B:HIS45 4.9 29.6 1.0

Zinc binding site 9 out of 24 in 2anu

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Zinc binding site 9 out of 24 in the Crystal Structure of Predicted Metal-Dependent Phosphoesterase (Php Family) (TM0559) From Thermotoga Maritima at 2.40 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of Crystal Structure of Predicted Metal-Dependent Phosphoesterase (Php Family) (TM0559) From Thermotoga Maritima at 2.40 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn405

b:42.8
occ:1.00
NE2 C:HIS13 2.2 32.1 1.0
OE1 C:GLU97 2.2 31.2 1.0
NE2 C:HIS15 2.3 30.9 1.0
OD1 C:ASP193 2.3 30.7 1.0
CE1 C:HIS13 3.0 30.3 1.0
CE1 C:HIS15 3.0 33.0 1.0
CD C:GLU97 3.2 24.4 1.0
CL C:CL1005 3.2 31.5 1.0
CD2 C:HIS13 3.3 29.5 1.0
CD2 C:HIS15 3.3 29.6 1.0
CG C:ASP193 3.3 26.8 1.0
OE2 C:GLU97 3.5 41.0 1.0
ZN C:ZN705 3.6 73.8 1.0
OD2 C:ASP193 3.9 34.1 1.0
CE1 C:HIS195 4.0 30.3 1.0
CE1 C:HIS45 4.0 29.7 1.0
CL C:CL1006 4.0 44.8 1.0
ZN C:ZN605 4.0 54.6 1.0
NE2 C:HIS45 4.1 28.6 1.0
ND1 C:HIS13 4.2 31.3 1.0
ND1 C:HIS15 4.2 30.7 1.0
CG C:HIS13 4.3 31.5 1.0
CG C:HIS15 4.3 27.8 1.0
ZN C:ZN505 4.4 33.3 1.0
NE2 C:HIS195 4.4 30.4 1.0
CB C:ASP193 4.4 26.6 1.0
CG C:GLU97 4.5 30.5 1.0
CA C:ASP193 4.7 25.0 1.0
CB C:GLU97 5.0 28.9 1.0

Zinc binding site 10 out of 24 in 2anu

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Zinc binding site 10 out of 24 in the Crystal Structure of Predicted Metal-Dependent Phosphoesterase (Php Family) (TM0559) From Thermotoga Maritima at 2.40 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 10 of Crystal Structure of Predicted Metal-Dependent Phosphoesterase (Php Family) (TM0559) From Thermotoga Maritima at 2.40 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn505

b:33.3
occ:1.00
NE2 C:HIS45 2.2 28.6 1.0
NE2 C:HIS195 2.3 30.4 1.0
OD2 C:ASP20 2.3 31.7 1.0
OD1 C:ASP20 2.5 27.3 1.0
CG C:ASP20 2.7 28.0 1.0
CL C:CL1005 2.9 31.5 1.0
CD2 C:HIS45 3.1 25.9 1.0
CE1 C:HIS45 3.1 29.7 1.0
CD2 C:HIS195 3.1 30.0 1.0
CE1 C:HIS195 3.4 30.3 1.0
CE1 C:HIS15 4.0 33.0 1.0
ND1 C:HIS15 4.1 30.7 1.0
ND1 C:HIS45 4.2 31.4 1.0
NE2 C:HIS15 4.2 30.9 1.0
CG C:HIS45 4.2 29.1 1.0
CB C:ASP20 4.2 27.5 1.0
CG C:HIS15 4.3 27.8 1.0
CD2 C:HIS15 4.3 29.6 1.0
CG C:HIS195 4.4 29.9 1.0
ZN C:ZN405 4.4 42.8 1.0
ND1 C:HIS195 4.4 28.6 1.0
O C:HOH1027 4.9 31.0 1.0
CB C:HIS15 5.0 27.9 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Wed Dec 16 03:17:44 2020

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