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Zinc in PDB 2a51: Structure of the (13-51) Domain of the Nucleocapsid Protein NCP8 From Sivlhoest

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of the (13-51) Domain of the Nucleocapsid Protein NCP8 From Sivlhoest (pdb code 2a51). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of the (13-51) Domain of the Nucleocapsid Protein NCP8 From Sivlhoest, PDB code: 2a51:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2a51

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Zinc binding site 1 out of 2 in the Structure of the (13-51) Domain of the Nucleocapsid Protein NCP8 From Sivlhoest


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the (13-51) Domain of the Nucleocapsid Protein NCP8 From Sivlhoest within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn54

b:0.0
occ:1.00
NE2 A:HIS11 2.1 0.0 1.0
SG A:CYS3 2.2 0.0 1.0
SG A:CYS16 2.2 0.0 1.0
SG A:CYS6 2.2 0.0 1.0
HB2 A:CYS16 2.7 0.0 1.0
HB2 A:CYS3 3.0 0.0 1.0
CB A:CYS16 3.0 0.0 1.0
CB A:CYS3 3.0 0.0 1.0
CD2 A:HIS11 3.1 0.0 1.0
CE1 A:HIS11 3.2 0.0 1.0
HB3 A:CYS3 3.2 0.0 1.0
H A:CYS6 3.2 0.0 1.0
HB3 A:CYS6 3.3 0.0 1.0
HD2 A:HIS11 3.3 0.0 1.0
CB A:CYS6 3.4 0.0 1.0
HE1 A:HIS11 3.4 0.0 1.0
OE1 A:GLN18 3.6 0.0 1.0
HB3 A:CYS16 3.6 0.0 1.0
HD21 A:ASN5 3.6 0.0 1.0
HB2 A:LYS8 3.7 0.0 1.0
H A:LYS8 3.8 0.0 1.0
N A:CYS6 4.0 0.0 1.0
HB3 A:ASN5 4.0 0.0 1.0
HB2 A:GLN18 4.2 0.0 1.0
HB2 A:CYS6 4.2 0.0 1.0
HA A:CYS16 4.2 0.0 1.0
H A:GLY7 4.2 0.0 1.0
CA A:CYS6 4.2 0.0 1.0
HA A:ALA13 4.3 0.0 1.0
CG A:HIS11 4.3 0.0 1.0
CA A:CYS16 4.3 0.0 1.0
ND1 A:HIS11 4.3 0.0 1.0
CD A:GLN18 4.4 0.0 1.0
HD3 A:LYS8 4.5 0.0 1.0
CA A:CYS3 4.5 0.0 1.0
ND2 A:ASN5 4.6 0.0 1.0
CB A:LYS8 4.7 0.0 1.0
HG3 A:GLN18 4.7 0.0 1.0
N A:GLY7 4.7 0.0 1.0
HA A:CYS3 4.7 0.0 1.0
H A:ASN5 4.8 0.0 1.0
N A:LYS8 4.8 0.0 1.0
O A:LYS8 4.8 0.0 1.0
C A:CYS6 4.8 0.0 1.0
CG A:GLN18 5.0 0.0 1.0
H A:CYS16 5.0 0.0 1.0
O A:THR12 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 2a51

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Zinc binding site 2 out of 2 in the Structure of the (13-51) Domain of the Nucleocapsid Protein NCP8 From Sivlhoest


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of the (13-51) Domain of the Nucleocapsid Protein NCP8 From Sivlhoest within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn55

b:0.0
occ:1.00
NE2 A:HIS32 2.0 0.0 1.0
SG A:CYS37 2.2 0.0 1.0
SG A:CYS27 2.2 0.0 1.0
SG A:CYS24 2.3 0.0 1.0
HB2 A:CYS37 2.5 0.0 1.0
HB3 A:CYS27 2.5 0.0 1.0
CB A:CYS37 2.9 0.0 1.0
CB A:CYS27 2.9 0.0 1.0
CD2 A:HIS32 3.0 0.0 1.0
HD2 A:HIS32 3.1 0.0 1.0
HB2 A:CYS24 3.1 0.0 1.0
HB3 A:CYS24 3.1 0.0 1.0
CE1 A:HIS32 3.1 0.0 1.0
CB A:CYS24 3.2 0.0 1.0
HE1 A:HIS32 3.4 0.0 1.0
HB3 A:CYS37 3.5 0.0 1.0
H A:CYS27 3.6 0.0 1.0
HB2 A:CYS27 3.7 0.0 1.0
HB3 A:SER29 3.7 0.0 1.0
HD21 A:ASN26 3.7 0.0 1.0
H A:SER29 3.7 0.0 1.0
HA A:CYS37 3.8 0.0 1.0
CA A:CYS27 4.0 0.0 1.0
CA A:CYS37 4.0 0.0 1.0
ND2 A:ASN26 4.1 0.0 1.0
N A:CYS27 4.1 0.0 1.0
HD22 A:ASN26 4.1 0.0 1.0
HB2 A:SER29 4.1 0.0 1.0
H A:GLY28 4.2 0.0 1.0
CG A:HIS32 4.2 0.0 1.0
ND1 A:HIS32 4.2 0.0 1.0
HB2 A:LYS39 4.4 0.0 1.0
CB A:SER29 4.4 0.0 1.0
HD2 A:PRO38 4.5 0.0 1.0
HA A:PHE34 4.5 0.0 1.0
C A:CYS27 4.5 0.0 1.0
N A:GLY28 4.6 0.0 1.0
O A:ARG33 4.6 0.0 1.0
CA A:CYS24 4.6 0.0 1.0
H A:CYS37 4.7 0.0 1.0
N A:SER29 4.7 0.0 1.0
N A:CYS37 4.8 0.0 1.0
HA A:CYS24 4.9 0.0 1.0
HA A:CYS27 4.9 0.0 1.0
H A:LYS39 4.9 0.0 1.0
HB3 A:ASN26 4.9 0.0 1.0
CG A:ASN26 5.0 0.0 1.0

Reference:

N.Morellet, H.Meudal, S.Bouaziz, B.P.Roques. Structure of the Zinc Finger Domain Encompassing Residues 13-51 of the Nucleocapsid Protein From Simian Immunodeficiency Virus Biochem.J. V. 393 725 2006.
ISSN: ISSN 0264-6021
PubMed: 16229684
DOI: 10.1042/BJ20051203
Page generated: Wed Dec 16 03:16:33 2020

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