Atomistry » Zinc » PDB 1zs0-2a21 » 1zv8
Atomistry »
  Zinc »
    PDB 1zs0-2a21 »
      1zv8 »

Zinc in PDB 1zv8: A Structure-Based Mechanism of Sars Virus Membrane Fusion

Protein crystallography data

The structure of A Structure-Based Mechanism of Sars Virus Membrane Fusion, PDB code: 1zv8 was solved by Y.Deng, J.Liu, Q.Zheng, W.Yong, J.Dai, M.Lu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 70.71 / 1.94
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 31.054, 55.565, 71.678, 81.26, 87.08, 84.10
R / Rfree (%) 20.3 / 27.4

Other elements in 1zv8:

The structure of A Structure-Based Mechanism of Sars Virus Membrane Fusion also contains other interesting chemical elements:

Arsenic (As) 1 atom
Sodium (Na) 6 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the A Structure-Based Mechanism of Sars Virus Membrane Fusion (pdb code 1zv8). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the A Structure-Based Mechanism of Sars Virus Membrane Fusion, PDB code: 1zv8:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 1zv8

Go back to Zinc Binding Sites List in 1zv8
Zinc binding site 1 out of 2 in the A Structure-Based Mechanism of Sars Virus Membrane Fusion


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of A Structure-Based Mechanism of Sars Virus Membrane Fusion within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Zn204

b:44.4
occ:1.00
O1 G:CAC201 1.7 37.2 1.0
O G:SER50 2.2 20.1 1.0
C G:SER50 3.0 20.3 1.0
OXT G:SER50 3.2 21.4 1.0
AS G:CAC201 3.3 40.1 1.0
OD2 H:ASP1 3.6 34.3 1.0
C2 G:CAC201 3.7 33.4 1.0
O G:HOH218 4.0 42.6 1.0
CA G:SER50 4.4 19.8 1.0
C1 G:CAC201 4.5 25.3 1.0
O2 G:CAC201 4.7 31.4 1.0
CG H:ASP1 4.8 2.0 1.0
CB G:SER50 4.9 19.2 1.0

Zinc binding site 2 out of 2 in 1zv8

Go back to Zinc Binding Sites List in 1zv8
Zinc binding site 2 out of 2 in the A Structure-Based Mechanism of Sars Virus Membrane Fusion


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of A Structure-Based Mechanism of Sars Virus Membrane Fusion within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Zn203

b:38.5
occ:1.00
O2 G:CAC201 1.8 31.4 1.0
O H:HOH211 1.8 37.5 1.0
O H:ACT202 2.3 52.4 1.0
O H:HOH212 2.5 44.1 1.0
N H:ASP1 3.1 22.8 1.0
C H:ACT202 3.2 51.1 1.0
AS G:CAC201 3.2 40.1 1.0
OXT H:ACT202 3.3 52.1 1.0
C1 G:CAC201 3.4 25.3 1.0
O G:HOH218 4.2 42.6 1.0
O1 G:CAC201 4.4 37.2 1.0
OD1 H:ASP1 4.4 21.9 1.0
CA H:ASP1 4.5 19.1 1.0
CH3 H:ACT202 4.6 54.0 1.0
C2 G:CAC201 4.8 33.4 1.0
CG H:ASP1 4.9 2.0 1.0

Reference:

Y.Deng, J.Liu, Q.Zheng, W.Yong, M.Lu. Structures and Polymorphic Interactions of Two Heptad-Repeat Regions of the Sars Virus S2 Protein. Structure V. 14 889 2006.
ISSN: ISSN 0969-2126
PubMed: 16698550
DOI: 10.1016/J.STR.2006.03.007
Page generated: Wed Dec 16 03:16:13 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy