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Zinc in PDB 1zfp: Growth Factor Receptor Binding Protein SH2 Domain Complexed with A Phosphotyrosyl Pentapeptide

Protein crystallography data

The structure of Growth Factor Receptor Binding Protein SH2 Domain Complexed with A Phosphotyrosyl Pentapeptide, PDB code: 1zfp was solved by J.Rahuel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 6.00 / 1.80
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 49.900, 113.700, 46.600, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Zinc Binding Sites:

The binding sites of Zinc atom in the Growth Factor Receptor Binding Protein SH2 Domain Complexed with A Phosphotyrosyl Pentapeptide (pdb code 1zfp). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Growth Factor Receptor Binding Protein SH2 Domain Complexed with A Phosphotyrosyl Pentapeptide, PDB code: 1zfp:

Zinc binding site 1 out of 1 in 1zfp

Go back to Zinc Binding Sites List in 1zfp
Zinc binding site 1 out of 1 in the Growth Factor Receptor Binding Protein SH2 Domain Complexed with A Phosphotyrosyl Pentapeptide


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Growth Factor Receptor Binding Protein SH2 Domain Complexed with A Phosphotyrosyl Pentapeptide within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn1

b:58.2
occ:1.00
NE2 E:HIS79 2.2 33.2 1.0
OE2 E:GLU152 2.3 34.6 1.0
OE1 E:GLU152 2.5 26.2 1.0
CD E:GLU152 2.7 29.9 1.0
CD2 E:HIS79 3.0 24.1 1.0
CE1 E:HIS79 3.3 30.9 1.0
CG E:GLU152 4.1 35.6 1.0
CG E:HIS79 4.2 40.3 1.0
ND1 E:HIS79 4.4 38.4 1.0
O E:HOH207 4.5 54.4 1.0
NH2 E:ARG149 4.8 0.0 1.0

Reference:

J.Rahuel, C.Garcia-Echeverria, P.Furet, A.Strauss, G.Caravatti, H.Fretz, J.Schoepfer, B.Gay. Structural Basis For the High Affinity of Amino-Aromatic SH2 Phosphopeptide Ligands. J.Mol.Biol. V. 279 1013 1998.
ISSN: ISSN 0022-2836
PubMed: 9642078
DOI: 10.1006/JMBI.1998.1790
Page generated: Wed Oct 16 21:14:24 2024

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