Zinc in PDB 1z84: X-Ray Structure of Galt-Like Protein From Arabidopsis Thaliana AT5G18200

The structure of X-Ray Structure of Galt-Like Protein From Arabidopsis Thaliana AT5G18200, PDB code: 1z84 was solved by J.G.Mccoy, E.Bitto, G.N.Phillips Jr., C.A.Bingman, Center For Eukaryoticstructural Genomics (Cesg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	31.28 / 1.83
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	62.037, 95.650, 110.918, 90.00, 90.00, 90.00
R / Rfree (%)	18.6 / 23.1

The binding sites of Zinc atom in the X-Ray Structure of Galt-Like Protein From Arabidopsis Thaliana AT5G18200 (pdb code 1z84). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the X-Ray Structure of Galt-Like Protein From Arabidopsis Thaliana AT5G18200, PDB code: 1z84:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the X-Ray Structure of Galt-Like Protein From Arabidopsis Thaliana AT5G18200


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of X-Ray Structure of Galt-Like Protein From Arabidopsis Thaliana AT5G18200 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn603 b:25.8 occ:1.00 ND1 A:HIS184 2.1 18.0 1.0 ND1 A:HIS133 2.1 23.4 1.0 SG A:CYS66 2.3 26.7 1.0 SG A:CYS63 2.3 27.0 1.0 CE1 A:HIS184 3.0 22.9 1.0 CE1 A:HIS133 3.1 24.8 1.0 CG A:HIS133 3.1 23.5 1.0 CG A:HIS184 3.1 22.2 1.0 CB A:HIS133 3.4 25.1 1.0 N A:CYS63 3.4 30.0 1.0 CB A:CYS63 3.4 26.9 1.0 N A:CYS66 3.5 24.7 1.0 CB A:HIS184 3.5 22.0 1.0 CB A:CYS66 3.6 25.2 1.0 O A:CYS63 3.8 26.6 1.0 CA A:HIS133 3.8 24.5 1.0 CA A:CYS63 3.8 27.5 1.0 CA A:CYS66 3.9 26.7 1.0 C A:SER62 4.0 31.5 1.0 C A:CYS63 4.1 26.6 1.0 NE2 A:HIS184 4.1 22.5 1.0 NE2 A:HIS133 4.2 23.8 1.0 CD2 A:HIS133 4.2 24.0 1.0 CD2 A:HIS184 4.2 19.2 1.0 C A:PHE65 4.2 24.8 1.0 CB A:PHE65 4.4 23.5 1.0 CA A:SER62 4.5 33.1 1.0 N A:PHE65 4.5 24.6 1.0 CA A:HIS184 4.6 21.8 1.0 N A:HIS133 4.6 26.0 1.0 CA A:PHE65 4.6 23.6 1.0 O A:HOH630 4.7 23.9 1.0 O A:SER62 4.7 31.2 1.0 C A:HIS133 4.9 24.6 1.0 O A:HIS133 4.9 24.8 1.0

Zinc binding site 2 out of 4 in the X-Ray Structure of Galt-Like Protein From Arabidopsis Thaliana AT5G18200


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of X-Ray Structure of Galt-Like Protein From Arabidopsis Thaliana AT5G18200 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn604 b:20.1 occ:1.00 ND1 A:HIS255 2.0 18.6 1.0 ND1 A:HIS310 2.1 20.7 1.0 SG A:CYS216 2.3 19.8 1.0 SG A:CYS219 2.3 19.3 1.0 CE1 A:HIS255 2.9 19.6 1.0 CE1 A:HIS310 3.0 19.2 1.0 CG A:HIS255 3.1 20.9 1.0 CB A:CYS216 3.1 20.8 1.0 CG A:HIS310 3.2 18.3 1.0 CB A:CYS219 3.4 19.1 1.0 CB A:HIS310 3.5 17.0 1.0 N A:CYS219 3.5 19.6 1.0 CB A:HIS255 3.5 22.1 1.0 CA A:HIS255 3.8 21.8 1.0 CA A:CYS219 3.9 20.1 1.0 NE2 A:HIS255 4.1 18.1 1.0 NE2 A:HIS310 4.2 16.9 1.0 CD2 A:HIS255 4.2 21.2 1.0 CD2 A:HIS310 4.3 19.1 1.0 O A:HOH697 4.4 23.0 1.0 C A:LEU218 4.4 19.0 1.0 CA A:CYS216 4.5 20.6 1.0 CA A:HIS310 4.7 16.6 1.0 N A:HIS255 4.8 22.4 1.0 C A:CYS216 4.8 20.6 1.0 CB A:LEU218 4.8 17.2 1.0 O A:CYS216 4.8 19.8 1.0 O A:PRO307 4.9 20.3 1.0 C A:HIS255 4.9 22.3 1.0 CA A:LEU218 4.9 19.1 1.0 N A:LEU218 4.9 19.7 1.0 N A:SER256 5.0 20.7 1.0 O A:HOH613 5.0 19.8 1.0

Zinc binding site 3 out of 4 in the X-Ray Structure of Galt-Like Protein From Arabidopsis Thaliana AT5G18200


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of X-Ray Structure of Galt-Like Protein From Arabidopsis Thaliana AT5G18200 within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn605 b:21.6 occ:0.60 ND1 B:HIS133 1.7 11.6 1.0 ND1 B:HIS184 2.1 31.2 1.0 CE1 B:HIS133 2.3 25.9 1.0 SG B:CYS63 2.3 31.6 1.0 SG B:CYS66 2.4 32.2 1.0 CE1 B:HIS184 3.0 34.5 1.0 N B:CYS66 3.0 34.6 1.0 CG B:HIS133 3.1 28.3 1.0 CG B:HIS184 3.2 32.5 1.0 CB B:CYS66 3.2 33.8 1.0 CA B:CYS66 3.3 35.1 1.0 CB B:CYS63 3.4 33.0 1.0 NE2 B:HIS133 3.5 25.8 1.0 CB B:HIS184 3.6 29.6 1.0 C B:PHE65 3.6 33.9 1.0 O B:CYS63 3.6 33.8 1.0 N B:CYS63 3.7 35.1 1.0 CB B:HIS133 3.8 31.9 1.0 C B:CYS63 3.9 33.1 1.0 CA B:CYS63 3.9 33.8 1.0 N B:PHE65 3.9 33.8 1.0 CD2 B:HIS133 3.9 25.3 1.0 CB B:PHE65 4.0 32.1 1.0 CA B:PHE65 4.0 33.2 1.0 NE2 B:HIS184 4.1 33.1 1.0 CD2 B:HIS184 4.2 31.6 1.0 O B:PHE65 4.3 33.7 1.0 CA B:HIS133 4.3 33.5 1.0 C B:SER62 4.5 36.4 1.0 O B:HOH666 4.6 34.8 1.0 N B:PRO64 4.7 32.8 1.0 CA B:HIS184 4.7 28.9 1.0 C B:CYS66 4.9 36.2 1.0 CA B:SER62 5.0 36.7 1.0 C B:PRO64 5.0 33.3 1.0

Zinc binding site 4 out of 4 in the X-Ray Structure of Galt-Like Protein From Arabidopsis Thaliana AT5G18200


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of X-Ray Structure of Galt-Like Protein From Arabidopsis Thaliana AT5G18200 within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn606 b:20.4 occ:1.00 ND1 B:HIS255 2.1 20.8 1.0 ND1 B:HIS310 2.2 18.3 1.0 SG B:CYS216 2.3 21.9 1.0 SG B:CYS219 2.4 20.6 1.0 CE1 B:HIS255 3.0 21.1 1.0 CE1 B:HIS310 3.1 15.7 1.0 CB B:CYS216 3.1 23.8 1.0 CG B:HIS310 3.2 16.2 1.0 CG B:HIS255 3.2 20.9 1.0 CB B:CYS219 3.4 20.9 1.0 CB B:HIS310 3.5 16.7 1.0 N B:CYS219 3.6 21.0 1.0 CB B:HIS255 3.6 20.3 1.0 CA B:HIS255 3.8 20.0 1.0 CA B:CYS219 3.9 21.0 1.0 NE2 B:HIS255 4.1 19.6 1.0 NE2 B:HIS310 4.2 14.2 1.0 CD2 B:HIS255 4.2 20.5 1.0 O B:HOH750 4.3 29.2 1.0 CD2 B:HIS310 4.3 19.9 1.0 C B:LEU218 4.4 20.9 1.0 CA B:CYS216 4.5 23.8 1.0 O B:CYS216 4.7 23.1 1.0 C B:CYS216 4.7 23.6 1.0 CA B:HIS310 4.8 16.9 1.0 N B:HIS255 4.8 20.5 1.0 C B:HIS255 4.8 20.4 1.0 CB B:LEU218 4.9 21.4 1.0 N B:LEU218 4.9 21.7 1.0 CA B:LEU218 5.0 20.8 1.0 N B:SER256 5.0 20.4 1.0

J.G.Mccoy, A.Arabshahi, E.Bitto, C.A.Bingman, F.J.Ruzicka, P.A.Frey, G.N.Phillips Jr.. Structure and Mechanism of An Adp-Glucose Phosphorylase From Arabidopsis Thaliana Biochemistry V. 45 3154 2006.
ISSN: ISSN 0006-2960
PubMed: 16519510
DOI: 10.1021/BI052232M