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Zinc in PDB 1yuj: Solution uc(Nmr) Structure of the Gaga Factor/Dna Complex, 50 Structures

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution uc(Nmr) Structure of the Gaga Factor/Dna Complex, 50 Structures (pdb code 1yuj). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Solution uc(Nmr) Structure of the Gaga Factor/Dna Complex, 50 Structures, PDB code: 1yuj:

Zinc binding site 1 out of 1 in 1yuj

Go back to Zinc Binding Sites List in 1yuj
Zinc binding site 1 out of 1 in the Solution uc(Nmr) Structure of the Gaga Factor/Dna Complex, 50 Structures


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution uc(Nmr) Structure of the Gaga Factor/Dna Complex, 50 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn64

b:0.3
occ:1.00
NE2 A:HIS57 2.0 0.4 1.0
NE2 A:HIS52 2.0 0.3 1.0
SG A:CYS36 2.3 0.3 1.0
SG A:CYS39 2.3 0.4 1.0
H A:CYS39 2.7 0.4 1.0
CE1 A:HIS52 3.0 0.3 1.0
CD2 A:HIS57 3.0 0.4 1.0
CE1 A:HIS57 3.0 0.5 1.0
CD2 A:HIS52 3.0 0.3 1.0
HB A:ILE38 3.2 0.5 1.0
HB1 A:ALA41 3.2 1.0 1.0
HE1 A:HIS52 3.2 0.4 1.0
HD2 A:HIS57 3.2 0.4 1.0
HE1 A:HIS57 3.3 0.5 1.0
HD2 A:HIS52 3.3 0.3 1.0
HB3 A:CYS39 3.3 0.5 1.0
CB A:CYS36 3.3 0.3 1.0
CB A:CYS39 3.4 0.5 1.0
HB2 A:CYS36 3.4 0.3 1.0
HB3 A:CYS36 3.4 0.3 1.0
N A:CYS39 3.5 0.4 1.0
H A:ALA41 3.6 0.4 1.0
HB2 A:ARG56 3.8 0.4 1.0
HB3 A:ALA41 4.0 1.1 1.0
CA A:CYS39 4.0 0.5 1.0
CB A:ALA41 4.0 0.3 1.0
ND1 A:HIS52 4.1 0.3 1.0
ND1 A:HIS57 4.2 0.5 1.0
CG A:HIS57 4.2 0.4 1.0
CG A:HIS52 4.2 0.3 1.0
CB A:ILE38 4.2 0.5 1.0
H A:ILE38 4.2 0.4 1.0
HD13 A:ILE38 4.3 1.2 1.0
HB2 A:CYS39 4.3 0.5 1.0
C A:CYS39 4.5 0.5 1.0
N A:ALA41 4.5 0.4 1.0
C A:ILE38 4.5 0.5 1.0
H A:TYR40 4.6 0.4 1.0
CA A:CYS36 4.7 0.3 1.0
CB A:ARG56 4.7 0.4 1.0
HB2 A:ALA41 4.7 1.0 1.0
N A:TYR40 4.8 0.4 1.0
HB3 A:ARG56 4.8 0.5 1.0
CA A:ILE38 4.8 0.5 1.0
N A:ILE38 4.9 0.4 1.0
HD22 A:LEU53 4.9 1.1 1.0
HG23 A:ILE38 4.9 1.2 1.0
HA A:CYS39 5.0 0.5 1.0
CA A:ALA41 5.0 0.4 1.0
HG13 A:ILE38 5.0 0.5 1.0
HG21 A:ILE38 5.0 1.2 1.0

Reference:

J.G.Omichinski, P.V.Pedone, G.Felsenfeld, A.M.Gronenborn, G.M.Clore. The Solution Structure of A Specific Gaga Factor-Dna Complex Reveals A Modular Binding Mode. Nat.Struct.Biol. V. 4 122 1997.
ISSN: ISSN 1072-8368
PubMed: 9033593
DOI: 10.1038/NSB0297-122
Page generated: Wed Dec 16 03:15:04 2020

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