Zinc in PDB 1yo7: Re-Engineering Topology of the Homodimeric Rop Protein Into A Single- Chain 4-Helix Bundle

The structure of Re-Engineering Topology of the Homodimeric Rop Protein Into A Single- Chain 4-Helix Bundle, PDB code: 1yo7 was solved by M.Sagermann, S.C.Emery, C.Sander, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	26.40 / 2.80
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	46.607, 52.830, 50.360, 90.00, 94.99, 90.00
R / Rfree (%)	21.6 / 31

The binding sites of Zinc atom in the Re-Engineering Topology of the Homodimeric Rop Protein Into A Single- Chain 4-Helix Bundle (pdb code 1yo7). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Re-Engineering Topology of the Homodimeric Rop Protein Into A Single- Chain 4-Helix Bundle, PDB code: 1yo7:

Zinc binding site 1 out of 1 in the Re-Engineering Topology of the Homodimeric Rop Protein Into A Single- Chain 4-Helix Bundle


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Re-Engineering Topology of the Homodimeric Rop Protein Into A Single- Chain 4-Helix Bundle within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:13.5 occ:1.00 OD2 B:ASP46 1.8 4.2 1.0 OD2 A:ASP46 2.0 9.5 1.0 NE2 B:HIS42 2.2 1.0 1.0 NE2 A:HIS42 2.2 1.0 1.0 CG A:ASP46 2.7 9.1 1.0 CD2 A:HIS42 2.8 1.4 1.0 OD1 A:ASP46 2.8 9.8 1.0 CG B:ASP46 2.9 4.0 1.0 CD2 B:HIS42 2.9 1.0 1.0 CE1 B:HIS42 3.1 2.5 1.0 CE1 A:HIS42 3.3 1.0 1.0 OD1 B:ASP46 3.3 4.8 1.0 CG A:HIS42 4.0 1.0 1.0 CG B:HIS42 4.0 1.9 1.0 ND1 B:HIS42 4.1 1.4 1.0 ND1 A:HIS42 4.2 1.4 1.0 CB A:ASP46 4.2 5.6 1.0 CB B:ASP46 4.2 3.3 1.0 OD2 B:ASP43 4.5 2.6 1.0 OD2 A:ASP43 4.5 1.0 1.0 NH2 A:ARG16 4.6 2.1 1.0 O A:HIS42 4.6 1.7 1.0 NH2 B:ARG16 4.9 1.0 1.0

M.Sagermann, S.C.Emery, C.Sander. Re-Engineering Topology of the Homodimeric Rop Protein Into A Single-Chain 4-Helix Bundle. To Be Published.