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Zinc in PDB 1yo7: Re-Engineering Topology of the Homodimeric Rop Protein Into A Single- Chain 4-Helix Bundle

Protein crystallography data

The structure of Re-Engineering Topology of the Homodimeric Rop Protein Into A Single- Chain 4-Helix Bundle, PDB code: 1yo7 was solved by M.Sagermann, S.C.Emery, C.Sander, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.40 / 2.80
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 46.607, 52.830, 50.360, 90.00, 94.99, 90.00
R / Rfree (%) 21.6 / 31

Zinc Binding Sites:

The binding sites of Zinc atom in the Re-Engineering Topology of the Homodimeric Rop Protein Into A Single- Chain 4-Helix Bundle (pdb code 1yo7). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Re-Engineering Topology of the Homodimeric Rop Protein Into A Single- Chain 4-Helix Bundle, PDB code: 1yo7:

Zinc binding site 1 out of 1 in 1yo7

Go back to Zinc Binding Sites List in 1yo7
Zinc binding site 1 out of 1 in the Re-Engineering Topology of the Homodimeric Rop Protein Into A Single- Chain 4-Helix Bundle


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Re-Engineering Topology of the Homodimeric Rop Protein Into A Single- Chain 4-Helix Bundle within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:13.5
occ:1.00
OD2 B:ASP46 1.8 4.2 1.0
OD2 A:ASP46 2.0 9.5 1.0
NE2 B:HIS42 2.2 1.0 1.0
NE2 A:HIS42 2.2 1.0 1.0
CG A:ASP46 2.7 9.1 1.0
CD2 A:HIS42 2.8 1.4 1.0
OD1 A:ASP46 2.8 9.8 1.0
CG B:ASP46 2.9 4.0 1.0
CD2 B:HIS42 2.9 1.0 1.0
CE1 B:HIS42 3.1 2.5 1.0
CE1 A:HIS42 3.3 1.0 1.0
OD1 B:ASP46 3.3 4.8 1.0
CG A:HIS42 4.0 1.0 1.0
CG B:HIS42 4.0 1.9 1.0
ND1 B:HIS42 4.1 1.4 1.0
ND1 A:HIS42 4.2 1.4 1.0
CB A:ASP46 4.2 5.6 1.0
CB B:ASP46 4.2 3.3 1.0
OD2 B:ASP43 4.5 2.6 1.0
OD2 A:ASP43 4.5 1.0 1.0
NH2 A:ARG16 4.6 2.1 1.0
O A:HIS42 4.6 1.7 1.0
NH2 B:ARG16 4.9 1.0 1.0

Reference:

M.Sagermann, S.C.Emery, C.Sander. Re-Engineering Topology of the Homodimeric Rop Protein Into A Single-Chain 4-Helix Bundle. To Be Published.
Page generated: Wed Dec 16 03:14:52 2020

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