Zinc in PDB 1ylv: Schiff-Base Complex of Yeast 5-Aminolaevulinic Acid Dehydratase with Laevulinic Acid

All present enzymatic activity of Schiff-Base Complex of Yeast 5-Aminolaevulinic Acid Dehydratase with Laevulinic Acid:
4.2.1.24;

The structure of Schiff-Base Complex of Yeast 5-Aminolaevulinic Acid Dehydratase with Laevulinic Acid, PDB code: 1ylv was solved by P.T.Erskine, R.Newbold, J.Roper, A.Coker, M.J.Warren, P.M.Shoolingin-Jordan, S.P.Wood, J.B.Cooper, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.00 / 2.15
Space group	I 4 2 2
Cell size a, b, c (Å), α, β, γ (°)	103.400, 103.400, 168.000, 90.00, 90.00, 90.00
R / Rfree (%)	n/a / n/a

The binding sites of Zinc atom in the Schiff-Base Complex of Yeast 5-Aminolaevulinic Acid Dehydratase with Laevulinic Acid (pdb code 1ylv). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Schiff-Base Complex of Yeast 5-Aminolaevulinic Acid Dehydratase with Laevulinic Acid, PDB code: 1ylv:

Zinc binding site 1 out of 1 in the Schiff-Base Complex of Yeast 5-Aminolaevulinic Acid Dehydratase with Laevulinic Acid


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Schiff-Base Complex of Yeast 5-Aminolaevulinic Acid Dehydratase with Laevulinic Acid within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn400 b:15.5 occ:1.00 O A:HOH885 1.9 19.5 1.0 SG A:CYS133 2.0 9.7 1.0 SG A:CYS143 2.2 26.4 1.0 SG A:CYS135 2.2 18.6 1.0 CB A:CYS135 3.1 10.1 1.0 CB A:CYS133 3.3 9.2 1.0 CB A:CYS143 3.4 36.1 1.0 N A:CYS135 3.9 20.7 1.0 CA A:CYS143 3.9 20.3 1.0 O A:HOH710 4.0 7.0 1.0 CA A:CYS135 4.1 14.3 1.0 O A:SER179 4.2 19.4 1.0 O A:HOH637 4.2 9.6 1.0 O A:HOH832 4.3 36.1 1.0 NH1 A:ARG232 4.5 50.6 1.0 OG A:SER179 4.6 13.9 1.0 CA A:CYS133 4.6 10.7 1.0 N A:LEU134 4.7 20.1 1.0 N A:CYS143 4.7 19.9 1.0 CA A:ASP180 4.7 9.1 1.0 O A:HOH582 4.8 23.9 1.0 C A:SER179 4.8 7.3 1.0 O A:CYS143 4.9 27.4 1.0 C A:CYS143 4.9 18.4 1.0 C A:CYS133 5.0 10.7 1.0

P.T.Erskine, R.Newbold, J.Roper, A.Coker, M.J.Warren, P.M.Shoolingin-Jordan, S.P.Wood, J.B.Cooper. The Schiff Base Complex of Yeast 5-Aminolaevulinic Acid Dehydratase with Laevulinic Acid. Protein Sci. V. 8 1250 1999.
ISSN: ISSN 0961-8368
PubMed: 10386874