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Zinc in PDB 1yjo: Structure of Nnqqny From Yeast Prion SUP35 with Zinc Acetate

Protein crystallography data

The structure of Structure of Nnqqny From Yeast Prion SUP35 with Zinc Acetate, PDB code: 1yjo was solved by R.Nelson, M.R.Sawaya, M.Balbirnie, A.O.Madsen, C.Riekel, R.Grothe, D.Eisenberg, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 22.54 / 1.30
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 21.153, 4.870, 23.130, 90.00, 102.93, 90.00
R / Rfree (%) 10.2 / 15.2

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of Nnqqny From Yeast Prion SUP35 with Zinc Acetate (pdb code 1yjo). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of Nnqqny From Yeast Prion SUP35 with Zinc Acetate, PDB code: 1yjo:

Zinc binding site 1 out of 1 in 1yjo

Go back to Zinc Binding Sites List in 1yjo
Zinc binding site 1 out of 1 in the Structure of Nnqqny From Yeast Prion SUP35 with Zinc Acetate


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Nnqqny From Yeast Prion SUP35 with Zinc Acetate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn7

b:6.5
occ:1.00
OXT A:ACY10 2.0 6.1 1.0
O A:TYR6 2.0 6.5 1.0
OXT A:TYR6 2.7 8.1 1.0
C A:TYR6 2.7 6.8 1.0
C A:ACY10 2.9 6.9 1.0
CH3 A:ACY10 3.3 7.0 1.0
O A:ACY10 4.1 6.4 1.0
CA A:TYR6 4.2 6.1 1.0
N A:TYR6 4.7 5.7 1.0
O A:HOH11 4.8 15.4 1.0

Reference:

R.Nelson, M.R.Sawaya, M.Balbirnie, A.O.Madsen, C.Riekel, R.Grothe, D.Eisenberg. Structure of the Cross-Beta Spine of Amyloid-Like Fibrils. Nature V. 435 773 2005.
ISSN: ISSN 0028-0836
PubMed: 15944695
DOI: 10.1038/NATURE03680
Page generated: Sat Sep 26 00:34:10 2020
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