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Zinc in PDB 1y7p: 1.9 A Crystal Structure of A Protein of Unknown Function AF1403 From Archaeoglobus Fulgidus, Probable Metabolic Regulator

Protein crystallography data

The structure of 1.9 A Crystal Structure of A Protein of Unknown Function AF1403 From Archaeoglobus Fulgidus, Probable Metabolic Regulator, PDB code: 1y7p was solved by R.Zhang, T.Skarina, A.Savchenko, A.Edwards, A.Joachimiak, Midwest Center For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.34 / 1.90
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 95.709, 95.709, 167.551, 90.00, 90.00, 90.00
R / Rfree (%) 21.1 / 25.5

Zinc Binding Sites:

The binding sites of Zinc atom in the 1.9 A Crystal Structure of A Protein of Unknown Function AF1403 From Archaeoglobus Fulgidus, Probable Metabolic Regulator (pdb code 1y7p). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the 1.9 A Crystal Structure of A Protein of Unknown Function AF1403 From Archaeoglobus Fulgidus, Probable Metabolic Regulator, PDB code: 1y7p:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in 1y7p

Go back to Zinc Binding Sites List in 1y7p
Zinc binding site 1 out of 3 in the 1.9 A Crystal Structure of A Protein of Unknown Function AF1403 From Archaeoglobus Fulgidus, Probable Metabolic Regulator


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of 1.9 A Crystal Structure of A Protein of Unknown Function AF1403 From Archaeoglobus Fulgidus, Probable Metabolic Regulator within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn301

b:44.3
occ:1.00
 O A:PHE209 2.6 26.3 1.0
O A:SER204 2.7 37.1 1.0
O A:MET201 2.7 21.7 1.0
O A:ALA207 2.8 47.9 1.0
O A:HOH420 3.0 38.2 1.0
O A:HIS202 3.1 25.3 1.0
C A:HIS202 3.6 24.5 1.0
C A:ALA207 3.8 48.5 1.0
C A:PHE209 3.8 28.3 1.0
C A:SER204 3.8 38.3 1.0
C A:MET201 3.9 21.5 1.0
CA A:HIS202 3.9 22.2 1.0
O A:HOH471 4.2 58.3 1.0
CB A:ALA207 4.3 49.6 1.0
N A:PHE209 4.4 35.2 1.0
N A:HIS202 4.4 21.2 1.0
N A:SER204 4.4 31.7 1.0
CA A:ALA207 4.4 48.8 1.0
C A:LYS208 4.5 41.0 1.0
N A:ALA207 4.6 49.7 1.0
CA A:SER204 4.6 35.5 1.0
N A:ILE203 4.6 25.1 1.0
C A:ILE203 4.6 29.2 1.0
CA A:PHE209 4.6 29.6 1.0
N A:LYS208 4.7 46.8 1.0
O A:LYS208 4.8 40.2 1.0
N A:ASP210 4.8 27.2 1.0
N A:GLU205 4.8 41.8 1.0
O A:ILE203 4.9 30.4 1.0
CA A:LYS208 4.9 44.9 1.0
CA A:ASP210 4.9 26.3 1.0
O A:HOH445 4.9 54.5 1.0
CA A:GLU205 4.9 45.4 1.0

Zinc binding site 2 out of 3 in 1y7p

Go back to Zinc Binding Sites List in 1y7p
Zinc binding site 2 out of 3 in the 1.9 A Crystal Structure of A Protein of Unknown Function AF1403 From Archaeoglobus Fulgidus, Probable Metabolic Regulator


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of 1.9 A Crystal Structure of A Protein of Unknown Function AF1403 From Archaeoglobus Fulgidus, Probable Metabolic Regulator within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn303

b:45.9
occ:1.00
 O B:SER204 2.5 36.1 1.0
O B:PHE209 2.7 31.2 1.0
O B:ALA207 2.7 41.4 1.0
O B:MET201 2.8 22.6 1.0
O B:HIS202 2.8 23.3 1.0
C B:HIS202 3.4 24.2 1.0
C B:SER204 3.7 36.7 1.0
C B:ALA207 3.8 42.7 1.0
CA B:HIS202 3.8 24.5 1.0
C B:PHE209 3.9 32.7 1.0
C B:MET201 3.9 23.5 1.0
N B:PHE209 4.3 37.4 1.0
C B:LYS208 4.3 40.3 1.0
N B:SER204 4.3 29.7 1.0
N B:HIS202 4.3 24.2 1.0
C B:ILE203 4.4 27.6 1.0
O B:HOH512 4.4 64.0 1.0
CB B:ALA207 4.4 43.2 1.0
N B:ILE203 4.4 24.0 1.0
CA B:SER204 4.5 33.2 1.0
O B:LYS208 4.5 41.3 1.0
CA B:ALA207 4.6 43.0 1.0
O B:ILE203 4.6 27.2 1.0
CA B:PHE209 4.6 34.0 1.0
N B:LYS208 4.6 42.6 1.0
N B:GLU205 4.7 39.8 1.0
CA B:LYS208 4.7 42.4 1.0
N B:ALA207 4.7 43.7 1.0
CA B:GLU205 4.8 43.3 1.0
N B:ASP210 4.9 32.0 1.0
CB B:SER204 4.9 32.9 1.0
CA B:ILE203 4.9 25.0 1.0

Zinc binding site 3 out of 3 in 1y7p

Go back to Zinc Binding Sites List in 1y7p
Zinc binding site 3 out of 3 in the 1.9 A Crystal Structure of A Protein of Unknown Function AF1403 From Archaeoglobus Fulgidus, Probable Metabolic Regulator


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of 1.9 A Crystal Structure of A Protein of Unknown Function AF1403 From Archaeoglobus Fulgidus, Probable Metabolic Regulator within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn302

b:47.6
occ:1.00
 O C:SER204 2.6 37.2 1.0
O C:PHE209 2.7 35.5 1.0
O C:MET201 2.7 26.6 1.0
O C:ALA207 2.7 46.5 1.0
O C:HIS202 2.8 28.4 1.0
C C:HIS202 3.4 28.5 1.0
C C:ALA207 3.6 46.7 1.0
CA C:HIS202 3.7 27.9 1.0
C C:SER204 3.8 37.6 1.0
C C:MET201 3.8 27.2 1.0
C C:PHE209 3.8 35.1 1.0
CB C:ALA207 4.1 46.4 1.0
C C:LYS208 4.2 43.6 1.0
N C:PHE209 4.2 40.0 1.0
N C:SER204 4.2 32.4 1.0
N C:HIS202 4.3 26.3 1.0
CA C:ALA207 4.3 47.1 1.0
O C:LYS208 4.4 43.5 1.0
N C:ILE203 4.5 28.6 1.0
CA C:SER204 4.5 34.4 1.0
N C:LYS208 4.5 46.4 1.0
C C:ILE203 4.5 30.4 1.0
CA C:PHE209 4.5 36.2 1.0
N C:ALA207 4.6 48.6 1.0
CA C:LYS208 4.6 46.5 1.0
CB C:SER204 4.8 33.4 1.0
N C:GLU205 4.8 41.7 1.0
N C:ASP210 4.9 34.9 1.0
CB C:PHE209 4.9 32.4 1.0
O C:ILE203 4.9 30.3 1.0

Reference:

R.Zhang, T.Skarina, A.Savchenko, A.Edwards, A.Joachimiak, Midwest Center For Structural Genomics (Mcsg). 1.9A Crystal Structure of A Hypothetical Protein AF1403 From Archaeoglobus Fulgidus To Be Published.
Page generated: Sat Sep 26 00:28:14 2020
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