Zinc in PDB 1y02: Crystal Structure of A Fyve-Type Domain From Caspase Regulator CARP2

The structure of Crystal Structure of A Fyve-Type Domain From Caspase Regulator CARP2, PDB code: 1y02 was solved by M.D.Tibbetts, L.Gu, E.N.Shiozaki, Y.Shi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.80
Space group	P 31
Cell size a, b, c (Å), α, β, γ (°)	51.196, 51.196, 38.564, 90.00, 90.00, 120.00
R / Rfree (%)	20.6 / 23.4

The binding sites of Zinc atom in the Crystal Structure of A Fyve-Type Domain From Caspase Regulator CARP2 (pdb code 1y02). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of A Fyve-Type Domain From Caspase Regulator CARP2, PDB code: 1y02:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of A Fyve-Type Domain From Caspase Regulator CARP2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Fyve-Type Domain From Caspase Regulator CARP2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn161 b:30.0 occ:1.00 SG A:CYS41 2.4 22.4 1.0 SG A:CYS63 2.4 23.3 1.0 SG A:CYS60 2.4 24.7 1.0 SG A:CYS38 2.4 24.4 1.0 CB A:CYS63 3.2 23.9 1.0 CB A:CYS38 3.2 23.6 1.0 CB A:CYS41 3.3 21.6 1.0 CB A:CYS60 3.5 25.5 1.0 N A:CYS41 3.7 25.8 1.0 N A:CYS60 4.0 26.0 1.0 CA A:CYS41 4.1 21.3 1.0 CZ A:PHE45 4.1 22.7 1.0 CE1 A:PHE45 4.2 19.4 1.0 CA A:CYS60 4.3 24.4 1.0 N A:CYS63 4.4 23.3 1.0 CA A:CYS63 4.4 24.0 1.0 CD1 A:LEU90 4.5 25.6 1.0 CB A:ASP40 4.6 29.7 1.0 CA A:CYS38 4.7 25.4 1.0 C A:ASP40 4.8 27.4 1.0 C A:CYS41 4.9 25.5 1.0 C A:CYS60 5.0 25.5 1.0 O A:CYS60 5.0 24.5 1.0 NE2 A:HIS91 5.0 25.0 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of A Fyve-Type Domain From Caspase Regulator CARP2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of A Fyve-Type Domain From Caspase Regulator CARP2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn162 b:32.0 occ:1.00 SG A:CYS46 2.3 29.1 1.0 SG A:CYS49 2.3 25.4 1.0 SG A:CYS22 2.4 24.2 1.0 SG A:CYS25 2.4 29.9 1.0 CB A:CYS46 3.1 24.6 1.0 CB A:CYS22 3.1 25.3 1.0 CB A:CYS49 3.3 21.2 1.0 CB A:CYS25 3.4 30.9 1.0 N A:CYS46 3.7 26.5 1.0 N A:CYS25 3.7 29.2 1.0 CA A:CYS46 4.0 26.1 1.0 CA A:CYS25 4.1 30.2 1.0 CB A:SER24 4.5 29.1 1.0 CA A:CYS22 4.6 27.4 1.0 CA A:CYS49 4.6 24.6 1.0 N A:CYS49 4.8 24.3 1.0 C A:SER24 4.8 31.2 1.0 C A:CYS25 4.9 31.4 1.0 C A:PHE45 4.9 23.5 1.0 N A:GLY26 4.9 30.6 1.0 OG1 A:THR48 5.0 27.6 1.0

M.D.Tibbetts, E.N.Shiozaki, L.Gu, E.R.Mcdonald, W.S.El-Deiry, Y.Shi. Crystal Structure of A Fyve-Type Zinc Finger Domain From the Caspase Regulator CARP2. Structure V. 12 2257 2004.
ISSN: ISSN 0969-2126
PubMed: 15576038
DOI: 10.1016/J.STR.2004.10.007