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Zinc in PDB 1x63: Solution Structure of the Second Lim Domain of Skeletal Muscle Lim Protein 1

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution Structure of the Second Lim Domain of Skeletal Muscle Lim Protein 1 (pdb code 1x63). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of the Second Lim Domain of Skeletal Muscle Lim Protein 1, PDB code: 1x63:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 1x63

Go back to Zinc Binding Sites List in 1x63
Zinc binding site 1 out of 2 in the Solution Structure of the Second Lim Domain of Skeletal Muscle Lim Protein 1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the Second Lim Domain of Skeletal Muscle Lim Protein 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:0.0
occ:1.00
ND1 A:HIS40 2.1 0.0 1.0
SG A:CYS43 2.3 0.0 1.0
SG A:CYS21 2.3 0.0 1.0
SG A:CYS18 2.4 0.0 1.0
HB2 A:HIS40 2.9 0.0 1.0
H A:CYS21 2.9 0.0 1.0
CE1 A:HIS40 3.0 0.0 1.0
H A:HIS40 3.1 0.0 1.0
CG A:HIS40 3.1 0.0 1.0
HE1 A:HIS40 3.2 0.0 1.0
CB A:CYS18 3.2 0.0 1.0
HB3 A:CYS18 3.2 0.0 1.0
HB2 A:CYS18 3.2 0.0 1.0
HB2 A:CYS43 3.3 0.0 1.0
CB A:CYS43 3.3 0.0 1.0
HB3 A:CYS21 3.4 0.0 1.0
CB A:HIS40 3.5 0.0 1.0
CB A:CYS21 3.5 0.0 1.0
HB3 A:CYS43 3.6 0.0 1.0
N A:CYS21 3.8 0.0 1.0
N A:HIS40 3.9 0.0 1.0
H A:LYS23 4.1 0.0 1.0
HD12 A:ILE25 4.1 0.0 1.0
NE2 A:HIS40 4.1 0.0 1.0
HB2 A:LYS23 4.2 0.0 1.0
H A:PHE22 4.2 0.0 1.0
CD2 A:HIS40 4.2 0.0 1.0
CA A:CYS21 4.2 0.0 1.0
HB3 A:HIS40 4.3 0.0 1.0
HD11 A:ILE25 4.3 0.0 1.0
CA A:HIS40 4.4 0.0 1.0
HA A:TRP39 4.4 0.0 1.0
HB2 A:CYS21 4.4 0.0 1.0
H A:GLY20 4.4 0.0 1.0
HG12 A:ILE25 4.5 0.0 1.0
HA3 A:GLY20 4.6 0.0 1.0
CD1 A:ILE25 4.7 0.0 1.0
CA A:CYS18 4.7 0.0 1.0
CA A:CYS43 4.7 0.0 1.0
H A:LYS19 4.7 0.0 1.0
H A:CYS43 4.8 0.0 1.0
N A:PHE22 4.8 0.0 1.0
C A:GLY20 4.9 0.0 1.0
O A:LYS23 4.9 0.0 1.0
N A:GLY20 4.9 0.0 1.0
C A:CYS21 4.9 0.0 1.0
HA A:HIS40 5.0 0.0 1.0
N A:LYS23 5.0 0.0 1.0
HA A:CYS18 5.0 0.0 1.0
HE2 A:HIS40 5.0 0.0 1.0
HA A:CYS43 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 1x63

Go back to Zinc Binding Sites List in 1x63
Zinc binding site 2 out of 2 in the Solution Structure of the Second Lim Domain of Skeletal Muscle Lim Protein 1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the Second Lim Domain of Skeletal Muscle Lim Protein 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:0.0
occ:1.00
SG A:CYS67 2.3 0.0 1.0
SG A:CYS70 2.3 0.0 1.0
SG A:CYS49 2.3 0.0 1.0
SG A:CYS46 2.4 0.0 1.0
H A:CYS49 2.9 0.0 1.0
HB2 A:CYS70 2.9 0.0 1.0
H A:CYS67 3.0 0.0 1.0
HB2 A:CYS46 3.1 0.0 1.0
CB A:CYS46 3.2 0.0 1.0
CB A:CYS70 3.2 0.0 1.0
HB3 A:CYS46 3.3 0.0 1.0
HB3 A:CYS49 3.4 0.0 1.0
HB3 A:ASN48 3.5 0.0 1.0
HB3 A:CYS67 3.5 0.0 1.0
CB A:CYS67 3.5 0.0 1.0
CB A:CYS49 3.5 0.0 1.0
H A:CYS70 3.7 0.0 1.0
N A:CYS49 3.8 0.0 1.0
HD21 A:ASN48 3.8 0.0 1.0
HG2 A:GLN51 3.8 0.0 1.0
N A:CYS67 3.8 0.0 1.0
HB3 A:CYS70 3.9 0.0 1.0
H A:LYS50 4.1 0.0 1.0
H A:ASN48 4.2 0.0 1.0
CA A:CYS67 4.2 0.0 1.0
CA A:CYS49 4.2 0.0 1.0
HA A:TYR66 4.3 0.0 1.0
CA A:CYS70 4.3 0.0 1.0
HB2 A:CYS67 4.4 0.0 1.0
N A:CYS70 4.4 0.0 1.0
HB2 A:CYS49 4.4 0.0 1.0
H A:GLN51 4.5 0.0 1.0
CB A:ASN48 4.5 0.0 1.0
ND2 A:ASN48 4.7 0.0 1.0
HB A:THR69 4.7 0.0 1.0
HA A:CYS70 4.7 0.0 1.0
CA A:CYS46 4.7 0.0 1.0
O A:CYS67 4.7 0.0 1.0
N A:LYS50 4.7 0.0 1.0
OE1 A:GLN51 4.7 0.0 1.0
CG A:GLN51 4.8 0.0 1.0
H A:SER47 4.8 0.0 1.0
C A:CYS67 4.9 0.0 1.0
C A:ASN48 4.9 0.0 1.0
N A:ASN48 4.9 0.0 1.0
C A:TYR66 4.9 0.0 1.0
CD A:GLN51 4.9 0.0 1.0
HA A:CYS46 4.9 0.0 1.0
C A:CYS49 4.9 0.0 1.0

Reference:

X.R.Qin, T.Nagashima, F.Hayashi, S.Yokoyama. Solution Structure of the Second Lim Domain of Skeletal Muscle Lim Protein 1 To Be Published.
Page generated: Wed Dec 16 03:11:38 2020

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