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Zinc in PDB 1x0t: Crystal Structure of Ribonuclease P Protein PH1601P From Pyrococcus Horikoshii OT3

Enzymatic activity of Crystal Structure of Ribonuclease P Protein PH1601P From Pyrococcus Horikoshii OT3

All present enzymatic activity of Crystal Structure of Ribonuclease P Protein PH1601P From Pyrococcus Horikoshii OT3:
3.1.26.5;

Protein crystallography data

The structure of Crystal Structure of Ribonuclease P Protein PH1601P From Pyrococcus Horikoshii OT3, PDB code: 1x0t was solved by Y.Kakuta, I.Ishimatsu, T.Numata, K.Kimura, M.Yao, I.Tanaka, M.Kimura, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.23 / 1.60
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 42.594, 52.691, 62.672, 90.00, 90.00, 90.00
R / Rfree (%) 21.7 / 24.5

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Ribonuclease P Protein PH1601P From Pyrococcus Horikoshii OT3 (pdb code 1x0t). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Ribonuclease P Protein PH1601P From Pyrococcus Horikoshii OT3, PDB code: 1x0t:

Zinc binding site 1 out of 1 in 1x0t

Go back to Zinc Binding Sites List in 1x0t
Zinc binding site 1 out of 1 in the Crystal Structure of Ribonuclease P Protein PH1601P From Pyrococcus Horikoshii OT3


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Ribonuclease P Protein PH1601P From Pyrococcus Horikoshii OT3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn150

b:16.2
occ:1.00
SG A:CYS100 2.3 16.3 1.0
SG A:CYS97 2.3 13.9 1.0
SG A:CYS68 2.4 15.1 1.0
SG A:CYS71 2.4 16.6 1.0
CB A:CYS68 3.1 16.0 1.0
CB A:CYS97 3.1 13.3 1.0
CB A:CYS100 3.3 17.1 1.0
CB A:CYS71 3.4 16.5 1.0
N A:CYS71 3.8 18.6 1.0
N A:CYS100 3.8 16.8 1.0
CA A:CYS100 4.1 17.5 1.0
CA A:CYS71 4.1 17.6 1.0
CB A:TYR102 4.4 18.5 1.0
CG2 A:THR73 4.5 16.4 1.0
CA A:CYS68 4.6 15.2 1.0
CA A:CYS97 4.6 14.6 1.0
CB A:ARG70 4.7 21.6 1.0
C A:CYS100 4.7 18.9 1.0
N A:TYR102 4.7 17.8 1.0
C A:GLU99 4.8 16.3 1.0
N A:GLY101 4.8 17.1 1.0
CB A:GLU99 4.8 14.6 1.0
C A:ARG70 4.9 21.5 1.0
C A:CYS71 4.9 17.8 1.0
N A:HIS72 4.9 17.1 1.0
C A:CYS97 5.0 16.4 1.0
O A:HOH153 5.0 17.8 1.0

Reference:

Y.Kakuta, I.Ishimatsu, T.Numata, K.Kimura, M.Yao, I.Tanaka, M.Kimura. Crystal Structure of A Ribonuclease P Protein PH1601P From Pyrococcus Horikoshii OT3: An Archaeal Homologue of Human Nuclear Ribonuclease P Protein RPP21(,) Biochemistry V. 44 12086 2005.
ISSN: ISSN 0006-2960
PubMed: 16142906
DOI: 10.1021/BI050738Z
Page generated: Wed Dec 16 03:10:55 2020

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