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Zinc in PDB 1woy: Crystal Structure of Methionyl Trna Synthetase Y225F Mutant From Thermus Thermophilus

Enzymatic activity of Crystal Structure of Methionyl Trna Synthetase Y225F Mutant From Thermus Thermophilus

All present enzymatic activity of Crystal Structure of Methionyl Trna Synthetase Y225F Mutant From Thermus Thermophilus:
6.1.1.10;

Protein crystallography data

The structure of Crystal Structure of Methionyl Trna Synthetase Y225F Mutant From Thermus Thermophilus, PDB code: 1woy was solved by M.Konno, R.Takeda, O.Nureki, S.Yokoyama, Riken Structuralgenomics/Proteomics Initiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 64.416, 82.731, 141.405, 90.00, 90.00, 90.00
R / Rfree (%) 18.9 / 22.6

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Methionyl Trna Synthetase Y225F Mutant From Thermus Thermophilus (pdb code 1woy). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Methionyl Trna Synthetase Y225F Mutant From Thermus Thermophilus, PDB code: 1woy:

Zinc binding site 1 out of 1 in 1woy

Go back to Zinc Binding Sites List in 1woy
Zinc binding site 1 out of 1 in the Crystal Structure of Methionyl Trna Synthetase Y225F Mutant From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Methionyl Trna Synthetase Y225F Mutant From Thermus Thermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn601

b:42.6
occ:1.00
ND1 A:HIS147 2.1 35.7 1.0
SG A:CYS130 2.3 45.1 1.0
SG A:CYS144 2.5 39.5 1.0
SG A:CYS127 2.5 40.4 1.0
CE1 A:HIS147 2.8 36.6 1.0
CB A:CYS130 3.3 45.1 1.0
CG A:HIS147 3.3 35.8 1.0
CB A:CYS144 3.4 32.8 1.0
N A:CYS130 3.6 46.5 1.0
CB A:CYS127 3.7 39.6 1.0
CB A:HIS147 3.9 36.2 1.0
CA A:CYS130 3.9 46.5 1.0
N A:HIS147 4.0 34.6 1.0
NE2 A:HIS147 4.0 38.6 1.0
CB A:ILE146 4.1 35.5 1.0
CB A:SER129 4.2 49.3 1.0
CD2 A:HIS147 4.3 34.0 1.0
CE2 A:TYR134 4.4 36.8 1.0
C A:SER129 4.5 46.9 1.0
OH A:TYR134 4.5 35.5 1.0
CA A:HIS147 4.6 37.5 1.0
CG2 A:ILE146 4.6 28.6 1.0
CD A:ARG149 4.7 67.0 1.0
CD1 A:ILE146 4.7 48.2 1.0
CA A:SER129 4.8 47.1 1.0
CA A:CYS144 4.8 36.2 1.0
C A:ILE146 4.9 32.5 1.0
CG1 A:ILE146 4.9 35.5 1.0
CA A:ILE146 4.9 31.6 1.0
CZ A:TYR134 4.9 35.0 1.0
N A:ILE146 5.0 30.7 1.0

Reference:

M.Konno, R.Takeda, O.Nureki, S.Yokoyama. Crystal Structure of Methionyl Trna Synthetase Y225F Mutant From Thermus Thermophilus To Be Published.
Page generated: Wed Dec 16 03:10:15 2020

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