Zinc in PDB 1wim: Solution Structure of the Ring Finger Domain of the Human UBCM4-Interacting Protein 4

The binding sites of Zinc atom in the Solution Structure of the Ring Finger Domain of the Human UBCM4-Interacting Protein 4 (pdb code 1wim). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of the Ring Finger Domain of the Human UBCM4-Interacting Protein 4, PDB code: 1wim:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Solution Structure of the Ring Finger Domain of the Human UBCM4-Interacting Protein 4


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the Ring Finger Domain of the Human UBCM4-Interacting Protein 4 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:0.0 occ:1.00 SG A:CYS31 2.3 0.0 1.0 SG A:CYS8 2.3 0.0 1.0 SG A:CYS11 2.3 0.0 1.0 SG A:CYS34 2.4 0.0 1.0 H A:CYS11 2.8 0.0 1.0 HB2 A:CYS34 3.2 0.0 1.0 HE2 A:TYR15 3.2 0.0 1.0 CB A:CYS8 3.2 0.0 1.0 HB3 A:CYS8 3.3 0.0 1.0 HB3 A:CYS11 3.3 0.0 1.0 HB2 A:LEU10 3.3 0.0 1.0 HB2 A:CYS8 3.3 0.0 1.0 HB3 A:CYS31 3.4 0.0 1.0 CB A:CYS11 3.4 0.0 1.0 H A:CYS31 3.4 0.0 1.0 CB A:CYS34 3.5 0.0 1.0 CB A:CYS31 3.5 0.0 1.0 N A:CYS11 3.6 0.0 1.0 CE2 A:TYR15 3.9 0.0 1.0 H A:CYS34 3.9 0.0 1.0 HB3 A:CYS34 4.0 0.0 1.0 CA A:CYS11 4.1 0.0 1.0 H A:LEU10 4.2 0.0 1.0 N A:CYS31 4.2 0.0 1.0 H A:GLY13 4.2 0.0 1.0 HB2 A:CYS11 4.3 0.0 1.0 HB2 A:CYS31 4.3 0.0 1.0 CB A:LEU10 4.3 0.0 1.0 HD11 A:LEU10 4.3 0.0 1.0 CA A:CYS31 4.4 0.0 1.0 OH A:TYR15 4.5 0.0 1.0 CZ A:TYR15 4.5 0.0 1.0 HB3 A:LEU10 4.6 0.0 1.0 CD2 A:TYR15 4.6 0.0 1.0 HD2 A:TYR15 4.6 0.0 1.0 O A:CYS31 4.6 0.0 1.0 CA A:CYS34 4.6 0.0 1.0 N A:CYS34 4.7 0.0 1.0 H A:LEU12 4.7 0.0 1.0 CA A:CYS8 4.7 0.0 1.0 C A:LEU10 4.7 0.0 1.0 C A:CYS11 4.8 0.0 1.0 HB3 A:PHE30 4.8 0.0 1.0 HB2 A:LEU33 4.9 0.0 1.0 CA A:LEU10 4.9 0.0 1.0 N A:LEU10 4.9 0.0 1.0 HH A:TYR15 4.9 0.0 1.0 C A:CYS31 5.0 0.0 1.0 N A:LEU12 5.0 0.0 1.0

Zinc binding site 2 out of 2 in the Solution Structure of the Ring Finger Domain of the Human UBCM4-Interacting Protein 4


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the Ring Finger Domain of the Human UBCM4-Interacting Protein 4 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:0.0 occ:1.00 SG A:CYS58 2.3 0.0 1.0 SG A:CYS28 2.3 0.0 1.0 SG A:CYS53 2.3 0.0 1.0 SG A:CYS26 2.4 0.0 1.0 HB2 A:CYS26 3.0 0.0 1.0 HB2 A:CYS58 3.2 0.0 1.0 HB2 A:CYS28 3.2 0.0 1.0 CB A:CYS26 3.3 0.0 1.0 HB2 A:CYS53 3.3 0.0 1.0 CB A:CYS28 3.4 0.0 1.0 CB A:CYS53 3.4 0.0 1.0 CB A:CYS58 3.4 0.0 1.0 HB3 A:ASP55 3.5 0.0 1.0 HB3 A:CYS53 3.7 0.0 1.0 H A:GLY62 3.7 0.0 1.0 HB3 A:CYS26 3.7 0.0 1.0 HB3 A:CYS28 3.7 0.0 1.0 HB3 A:CYS58 4.0 0.0 1.0 HD11 A:ILE23 4.1 0.0 1.0 O A:CYS26 4.2 0.0 1.0 HB2 A:ASP55 4.2 0.0 1.0 HE2 A:PHE30 4.3 0.0 1.0 CB A:ASP55 4.3 0.0 1.0 HA A:CYS58 4.5 0.0 1.0 HZ A:PHE30 4.5 0.0 1.0 H A:ASP55 4.5 0.0 1.0 CA A:CYS26 4.6 0.0 1.0 N A:GLY62 4.6 0.0 1.0 CA A:CYS58 4.6 0.0 1.0 HD2 A:PRO54 4.6 0.0 1.0 H A:GLN61 4.7 0.0 1.0 HB3 A:LYS60 4.7 0.0 1.0 C A:CYS26 4.7 0.0 1.0 HA A:GLN61 4.7 0.0 1.0 CA A:CYS28 4.7 0.0 1.0 CA A:CYS53 4.8 0.0 1.0 HA3 A:GLY62 4.8 0.0 1.0 HD13 A:ILE23 4.9 0.0 1.0 HA A:CYS53 4.9 0.0 1.0 CD1 A:ILE23 5.0 0.0 1.0 H A:CYS28 5.0 0.0 1.0

K.Miyamoto, K.Saito, S.Koshiba, M.Inoue, T.Kigawa, S.Yokoyama. Solution Structure of the Ring Finger Domain of the Human UBCM4-Interacting Protein 4 To Be Published.