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Zinc in PDB 1wim: Solution Structure of the Ring Finger Domain of the Human UBCM4-Interacting Protein 4

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution Structure of the Ring Finger Domain of the Human UBCM4-Interacting Protein 4 (pdb code 1wim). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of the Ring Finger Domain of the Human UBCM4-Interacting Protein 4, PDB code: 1wim:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 1wim

Go back to Zinc Binding Sites List in 1wim
Zinc binding site 1 out of 2 in the Solution Structure of the Ring Finger Domain of the Human UBCM4-Interacting Protein 4


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the Ring Finger Domain of the Human UBCM4-Interacting Protein 4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:0.0
occ:1.00
SG A:CYS31 2.3 0.0 1.0
SG A:CYS8 2.3 0.0 1.0
SG A:CYS11 2.3 0.0 1.0
SG A:CYS34 2.4 0.0 1.0
H A:CYS11 2.8 0.0 1.0
HB2 A:CYS34 3.2 0.0 1.0
HE2 A:TYR15 3.2 0.0 1.0
CB A:CYS8 3.2 0.0 1.0
HB3 A:CYS8 3.3 0.0 1.0
HB3 A:CYS11 3.3 0.0 1.0
HB2 A:LEU10 3.3 0.0 1.0
HB2 A:CYS8 3.3 0.0 1.0
HB3 A:CYS31 3.4 0.0 1.0
CB A:CYS11 3.4 0.0 1.0
H A:CYS31 3.4 0.0 1.0
CB A:CYS34 3.5 0.0 1.0
CB A:CYS31 3.5 0.0 1.0
N A:CYS11 3.6 0.0 1.0
CE2 A:TYR15 3.9 0.0 1.0
H A:CYS34 3.9 0.0 1.0
HB3 A:CYS34 4.0 0.0 1.0
CA A:CYS11 4.1 0.0 1.0
H A:LEU10 4.2 0.0 1.0
N A:CYS31 4.2 0.0 1.0
H A:GLY13 4.2 0.0 1.0
HB2 A:CYS11 4.3 0.0 1.0
HB2 A:CYS31 4.3 0.0 1.0
CB A:LEU10 4.3 0.0 1.0
HD11 A:LEU10 4.3 0.0 1.0
CA A:CYS31 4.4 0.0 1.0
OH A:TYR15 4.5 0.0 1.0
CZ A:TYR15 4.5 0.0 1.0
HB3 A:LEU10 4.6 0.0 1.0
CD2 A:TYR15 4.6 0.0 1.0
HD2 A:TYR15 4.6 0.0 1.0
O A:CYS31 4.6 0.0 1.0
CA A:CYS34 4.6 0.0 1.0
N A:CYS34 4.7 0.0 1.0
H A:LEU12 4.7 0.0 1.0
CA A:CYS8 4.7 0.0 1.0
C A:LEU10 4.7 0.0 1.0
C A:CYS11 4.8 0.0 1.0
HB3 A:PHE30 4.8 0.0 1.0
HB2 A:LEU33 4.9 0.0 1.0
CA A:LEU10 4.9 0.0 1.0
N A:LEU10 4.9 0.0 1.0
HH A:TYR15 4.9 0.0 1.0
C A:CYS31 5.0 0.0 1.0
N A:LEU12 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 1wim

Go back to Zinc Binding Sites List in 1wim
Zinc binding site 2 out of 2 in the Solution Structure of the Ring Finger Domain of the Human UBCM4-Interacting Protein 4


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the Ring Finger Domain of the Human UBCM4-Interacting Protein 4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:0.0
occ:1.00
SG A:CYS58 2.3 0.0 1.0
SG A:CYS28 2.3 0.0 1.0
SG A:CYS53 2.3 0.0 1.0
SG A:CYS26 2.4 0.0 1.0
HB2 A:CYS26 3.0 0.0 1.0
HB2 A:CYS58 3.2 0.0 1.0
HB2 A:CYS28 3.2 0.0 1.0
CB A:CYS26 3.3 0.0 1.0
HB2 A:CYS53 3.3 0.0 1.0
CB A:CYS28 3.4 0.0 1.0
CB A:CYS53 3.4 0.0 1.0
CB A:CYS58 3.4 0.0 1.0
HB3 A:ASP55 3.5 0.0 1.0
HB3 A:CYS53 3.7 0.0 1.0
H A:GLY62 3.7 0.0 1.0
HB3 A:CYS26 3.7 0.0 1.0
HB3 A:CYS28 3.7 0.0 1.0
HB3 A:CYS58 4.0 0.0 1.0
HD11 A:ILE23 4.1 0.0 1.0
O A:CYS26 4.2 0.0 1.0
HB2 A:ASP55 4.2 0.0 1.0
HE2 A:PHE30 4.3 0.0 1.0
CB A:ASP55 4.3 0.0 1.0
HA A:CYS58 4.5 0.0 1.0
HZ A:PHE30 4.5 0.0 1.0
H A:ASP55 4.5 0.0 1.0
CA A:CYS26 4.6 0.0 1.0
N A:GLY62 4.6 0.0 1.0
CA A:CYS58 4.6 0.0 1.0
HD2 A:PRO54 4.6 0.0 1.0
H A:GLN61 4.7 0.0 1.0
HB3 A:LYS60 4.7 0.0 1.0
C A:CYS26 4.7 0.0 1.0
HA A:GLN61 4.7 0.0 1.0
CA A:CYS28 4.7 0.0 1.0
CA A:CYS53 4.8 0.0 1.0
HA3 A:GLY62 4.8 0.0 1.0
HD13 A:ILE23 4.9 0.0 1.0
HA A:CYS53 4.9 0.0 1.0
CD1 A:ILE23 5.0 0.0 1.0
H A:CYS28 5.0 0.0 1.0

Reference:

K.Miyamoto, K.Saito, S.Koshiba, M.Inoue, T.Kigawa, S.Yokoyama. Solution Structure of the Ring Finger Domain of the Human UBCM4-Interacting Protein 4 To Be Published.
Page generated: Mon Jan 25 16:15:56 2021

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