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Zinc in PDB 1wem: Solution Structure of Phd Domain in Death Inducer- Obliterator 1(Dio-1)

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution Structure of Phd Domain in Death Inducer- Obliterator 1(Dio-1) (pdb code 1wem). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of Phd Domain in Death Inducer- Obliterator 1(Dio-1), PDB code: 1wem:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 1wem

Go back to Zinc Binding Sites List in 1wem
Zinc binding site 1 out of 2 in the Solution Structure of Phd Domain in Death Inducer- Obliterator 1(Dio-1)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of Phd Domain in Death Inducer- Obliterator 1(Dio-1) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:0.0
occ:1.00
SG A:CYS44 2.3 0.0 1.0
SG A:CYS21 2.3 0.0 1.0
SG A:CYS19 2.3 0.0 1.0
ND1 A:HIS41 2.3 0.0 1.0
HB2 A:HIS41 2.7 0.0 1.0
HB3 A:CYS19 3.1 0.0 1.0
HB3 A:CYS21 3.1 0.0 1.0
CG A:HIS41 3.3 0.0 1.0
CB A:CYS19 3.3 0.0 1.0
HB2 A:CYS44 3.3 0.0 1.0
CB A:CYS44 3.3 0.0 1.0
CE1 A:HIS41 3.3 0.0 1.0
CB A:CYS21 3.4 0.0 1.0
H A:HIS41 3.4 0.0 1.0
H A:CYS21 3.4 0.0 1.0
CB A:HIS41 3.5 0.0 1.0
HB3 A:CYS44 3.5 0.0 1.0
HB2 A:CYS19 3.5 0.0 1.0
HE1 A:HIS41 3.6 0.0 1.0
HB2 A:CYS21 4.1 0.0 1.0
HB2 A:GLN23 4.1 0.0 1.0
N A:HIS41 4.1 0.0 1.0
HE21 A:GLN23 4.1 0.0 1.0
N A:CYS21 4.2 0.0 1.0
HB3 A:HIS41 4.2 0.0 1.0
HE A:ARG28 4.4 0.0 1.0
CD2 A:HIS41 4.4 0.0 1.0
CA A:CYS21 4.4 0.0 1.0
CA A:HIS41 4.4 0.0 1.0
NE2 A:HIS41 4.4 0.0 1.0
H A:ILE20 4.6 0.0 1.0
HG13 A:ILE20 4.6 0.0 1.0
CA A:CYS19 4.7 0.0 1.0
HA A:PHE40 4.7 0.0 1.0
H A:CYS44 4.8 0.0 1.0
HG12 A:ILE20 4.8 0.0 1.0
CA A:CYS44 4.8 0.0 1.0
NE2 A:GLN23 4.8 0.0 1.0
HD3 A:ARG28 4.8 0.0 1.0
HG3 A:GLN23 4.8 0.0 1.0
N A:ILE20 4.9 0.0 1.0
C A:CYS19 5.0 0.0 1.0
HB3 A:PHE40 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 1wem

Go back to Zinc Binding Sites List in 1wem
Zinc binding site 2 out of 2 in the Solution Structure of Phd Domain in Death Inducer- Obliterator 1(Dio-1)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of Phd Domain in Death Inducer- Obliterator 1(Dio-1) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:0.0
occ:1.00
SG A:CYS67 2.3 0.0 1.0
SG A:CYS36 2.3 0.0 1.0
SG A:CYS33 2.3 0.0 1.0
SG A:CYS64 2.3 0.0 1.0
H A:CYS36 2.7 0.0 1.0
HB3 A:CYS64 3.0 0.0 1.0
HE2 A:PHE40 3.0 0.0 1.0
CB A:CYS64 3.3 0.0 1.0
HB2 A:ARG35 3.3 0.0 1.0
HB2 A:CYS67 3.3 0.0 1.0
CB A:CYS33 3.3 0.0 1.0
HB3 A:CYS33 3.3 0.0 1.0
HB2 A:CYS33 3.4 0.0 1.0
HB3 A:CYS36 3.4 0.0 1.0
CB A:CYS36 3.5 0.0 1.0
CB A:CYS67 3.5 0.0 1.0
N A:CYS36 3.5 0.0 1.0
H A:CYS64 3.6 0.0 1.0
CE2 A:PHE40 3.9 0.0 1.0
H A:CYS67 4.1 0.0 1.0
CA A:CYS36 4.1 0.0 1.0
HB2 A:CYS64 4.1 0.0 1.0
N A:CYS64 4.1 0.0 1.0
H A:ARG35 4.1 0.0 1.0
CA A:CYS64 4.2 0.0 1.0
H A:GLU37 4.2 0.0 1.0
CB A:ARG35 4.2 0.0 1.0
HB3 A:ARG35 4.2 0.0 1.0
HB3 A:CYS67 4.2 0.0 1.0
HZ A:PHE40 4.3 0.0 1.0
H A:GLU38 4.3 0.0 1.0
HB2 A:CYS36 4.4 0.0 1.0
HB2 A:GLU38 4.5 0.0 1.0
N A:CYS67 4.5 0.0 1.0
CA A:CYS67 4.5 0.0 1.0
HG21 A:ILE63 4.5 0.0 1.0
O A:CYS64 4.5 0.0 1.0
CZ A:PHE40 4.5 0.0 1.0
C A:ARG35 4.6 0.0 1.0
C A:CYS64 4.6 0.0 1.0
HB3 A:ASN66 4.6 0.0 1.0
N A:GLU37 4.7 0.0 1.0
N A:ARG35 4.7 0.0 1.0
H A:ASP34 4.7 0.0 1.0
HA A:CYS67 4.7 0.0 1.0
C A:CYS36 4.7 0.0 1.0
CA A:ARG35 4.7 0.0 1.0
CA A:CYS33 4.8 0.0 1.0
HA A:ILE63 4.8 0.0 1.0
HD2 A:PHE40 4.8 0.0 1.0
CD2 A:PHE40 4.8 0.0 1.0
HA A:CYS36 5.0 0.0 1.0

Reference:

F.He, Y.Muto, M.Inoue, T.Kigawa, M.Shirouzu, T.Terada, S.Yokoyama. Solution Structure of Phd Domain in Death Inducer-Obliterator 1(Dio-1) To Be Published.
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