Zinc in PDB 1wem: Solution Structure of Phd Domain in Death Inducer- Obliterator 1(Dio-1)

The binding sites of Zinc atom in the Solution Structure of Phd Domain in Death Inducer- Obliterator 1(Dio-1) (pdb code 1wem). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of Phd Domain in Death Inducer- Obliterator 1(Dio-1), PDB code: 1wem:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Solution Structure of Phd Domain in Death Inducer- Obliterator 1(Dio-1)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of Phd Domain in Death Inducer- Obliterator 1(Dio-1) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:0.0 occ:1.00 SG A:CYS44 2.3 0.0 1.0 SG A:CYS21 2.3 0.0 1.0 SG A:CYS19 2.3 0.0 1.0 ND1 A:HIS41 2.3 0.0 1.0 HB2 A:HIS41 2.7 0.0 1.0 HB3 A:CYS19 3.1 0.0 1.0 HB3 A:CYS21 3.1 0.0 1.0 CG A:HIS41 3.3 0.0 1.0 CB A:CYS19 3.3 0.0 1.0 HB2 A:CYS44 3.3 0.0 1.0 CB A:CYS44 3.3 0.0 1.0 CE1 A:HIS41 3.3 0.0 1.0 CB A:CYS21 3.4 0.0 1.0 H A:HIS41 3.4 0.0 1.0 H A:CYS21 3.4 0.0 1.0 CB A:HIS41 3.5 0.0 1.0 HB3 A:CYS44 3.5 0.0 1.0 HB2 A:CYS19 3.5 0.0 1.0 HE1 A:HIS41 3.6 0.0 1.0 HB2 A:CYS21 4.1 0.0 1.0 HB2 A:GLN23 4.1 0.0 1.0 N A:HIS41 4.1 0.0 1.0 HE21 A:GLN23 4.1 0.0 1.0 N A:CYS21 4.2 0.0 1.0 HB3 A:HIS41 4.2 0.0 1.0 HE A:ARG28 4.4 0.0 1.0 CD2 A:HIS41 4.4 0.0 1.0 CA A:CYS21 4.4 0.0 1.0 CA A:HIS41 4.4 0.0 1.0 NE2 A:HIS41 4.4 0.0 1.0 H A:ILE20 4.6 0.0 1.0 HG13 A:ILE20 4.6 0.0 1.0 CA A:CYS19 4.7 0.0 1.0 HA A:PHE40 4.7 0.0 1.0 H A:CYS44 4.8 0.0 1.0 HG12 A:ILE20 4.8 0.0 1.0 CA A:CYS44 4.8 0.0 1.0 NE2 A:GLN23 4.8 0.0 1.0 HD3 A:ARG28 4.8 0.0 1.0 HG3 A:GLN23 4.8 0.0 1.0 N A:ILE20 4.9 0.0 1.0 C A:CYS19 5.0 0.0 1.0 HB3 A:PHE40 5.0 0.0 1.0

Zinc binding site 2 out of 2 in the Solution Structure of Phd Domain in Death Inducer- Obliterator 1(Dio-1)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of Phd Domain in Death Inducer- Obliterator 1(Dio-1) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:0.0 occ:1.00 SG A:CYS67 2.3 0.0 1.0 SG A:CYS36 2.3 0.0 1.0 SG A:CYS33 2.3 0.0 1.0 SG A:CYS64 2.3 0.0 1.0 H A:CYS36 2.7 0.0 1.0 HB3 A:CYS64 3.0 0.0 1.0 HE2 A:PHE40 3.0 0.0 1.0 CB A:CYS64 3.3 0.0 1.0 HB2 A:ARG35 3.3 0.0 1.0 HB2 A:CYS67 3.3 0.0 1.0 CB A:CYS33 3.3 0.0 1.0 HB3 A:CYS33 3.3 0.0 1.0 HB2 A:CYS33 3.4 0.0 1.0 HB3 A:CYS36 3.4 0.0 1.0 CB A:CYS36 3.5 0.0 1.0 CB A:CYS67 3.5 0.0 1.0 N A:CYS36 3.5 0.0 1.0 H A:CYS64 3.6 0.0 1.0 CE2 A:PHE40 3.9 0.0 1.0 H A:CYS67 4.1 0.0 1.0 CA A:CYS36 4.1 0.0 1.0 HB2 A:CYS64 4.1 0.0 1.0 N A:CYS64 4.1 0.0 1.0 H A:ARG35 4.1 0.0 1.0 CA A:CYS64 4.2 0.0 1.0 H A:GLU37 4.2 0.0 1.0 CB A:ARG35 4.2 0.0 1.0 HB3 A:ARG35 4.2 0.0 1.0 HB3 A:CYS67 4.2 0.0 1.0 HZ A:PHE40 4.3 0.0 1.0 H A:GLU38 4.3 0.0 1.0 HB2 A:CYS36 4.4 0.0 1.0 HB2 A:GLU38 4.5 0.0 1.0 N A:CYS67 4.5 0.0 1.0 CA A:CYS67 4.5 0.0 1.0 HG21 A:ILE63 4.5 0.0 1.0 O A:CYS64 4.5 0.0 1.0 CZ A:PHE40 4.5 0.0 1.0 C A:ARG35 4.6 0.0 1.0 C A:CYS64 4.6 0.0 1.0 HB3 A:ASN66 4.6 0.0 1.0 N A:GLU37 4.7 0.0 1.0 N A:ARG35 4.7 0.0 1.0 H A:ASP34 4.7 0.0 1.0 HA A:CYS67 4.7 0.0 1.0 C A:CYS36 4.7 0.0 1.0 CA A:ARG35 4.7 0.0 1.0 CA A:CYS33 4.8 0.0 1.0 HA A:ILE63 4.8 0.0 1.0 HD2 A:PHE40 4.8 0.0 1.0 CD2 A:PHE40 4.8 0.0 1.0 HA A:CYS36 5.0 0.0 1.0

F.He, Y.Muto, M.Inoue, T.Kigawa, M.Shirouzu, T.Terada, S.Yokoyama. Solution Structure of Phd Domain in Death Inducer-Obliterator 1(Dio-1) To Be Published.