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Zinc in PDB 1wej: IGG1 Fab Fragment (of E8 Antibody) Complexed with Horse Cytochrome C at 1.8 A Resolution

Protein crystallography data

The structure of IGG1 Fab Fragment (of E8 Antibody) Complexed with Horse Cytochrome C at 1.8 A Resolution, PDB code: 1wej was solved by S.E.Mylvaganam, Y.Paterson, E.D.Getzoff, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 79.580, 72.540, 94.380, 90.00, 90.00, 90.00
R / Rfree (%) 20 / 25.6

Zinc Binding Sites:

The binding sites of Zinc atom in the IGG1 Fab Fragment (of E8 Antibody) Complexed with Horse Cytochrome C at 1.8 A Resolution (pdb code 1wej). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the IGG1 Fab Fragment (of E8 Antibody) Complexed with Horse Cytochrome C at 1.8 A Resolution, PDB code: 1wej:

Zinc binding site 1 out of 1 in 1wej

Go back to Zinc Binding Sites List in 1wej
Zinc binding site 1 out of 1 in the IGG1 Fab Fragment (of E8 Antibody) Complexed with Horse Cytochrome C at 1.8 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of IGG1 Fab Fragment (of E8 Antibody) Complexed with Horse Cytochrome C at 1.8 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Zn215

b:38.8
occ:1.00
OD2 L:ASP151 1.8 23.6 1.0
ND1 L:HIS189 2.4 18.5 1.0
CG L:ASP151 2.6 16.4 1.0
CB L:ASP151 2.9 19.5 1.0
O L:HOH368 3.0 41.4 1.0
CE1 L:HIS189 3.4 17.4 1.0
CG L:HIS189 3.4 18.5 1.0
OD1 L:ASP151 3.7 17.8 1.0
CB L:HIS189 3.7 17.8 1.0
CA L:HIS189 4.0 18.2 1.0
O L:ARG188 4.2 19.5 1.0
O L:HOH312 4.2 23.1 1.0
CA L:ASP151 4.3 17.7 1.0
CG2 L:ILE150 4.5 21.4 1.0
NE2 L:HIS189 4.5 19.1 1.0
CD2 L:HIS189 4.5 19.6 1.0
O L:ILE150 4.6 18.6 1.0
N L:ASP151 4.7 16.7 1.0
N L:ASN190 4.7 20.8 1.0
C L:ILE150 4.8 17.9 1.0
N L:HIS189 4.9 18.4 1.0
C L:HIS189 4.9 19.4 1.0
C L:ARG188 5.0 19.0 1.0

Reference:

S.E.Mylvaganam, Y.Paterson, E.D.Getzoff. Structural Basis For the Binding of An Anti-Cytochrome C Antibody to Its Antigen: Crystal Structures of FABE8-Cytochrome C Complex to 1.8 A Resolution and FABE8 to 2.26 A Resolution. J.Mol.Biol. V. 281 301 1998.
ISSN: ISSN 0022-2836
PubMed: 9698550
DOI: 10.1006/JMBI.1998.1942
Page generated: Mon Jan 25 16:15:26 2021

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