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Zinc in PDB 1wcz: Crystal Structure of An Alkaline Form of V8 Protease From Staphylococcus Aureus

Enzymatic activity of Crystal Structure of An Alkaline Form of V8 Protease From Staphylococcus Aureus

All present enzymatic activity of Crystal Structure of An Alkaline Form of V8 Protease From Staphylococcus Aureus:
3.4.21.19;

Protein crystallography data

The structure of Crystal Structure of An Alkaline Form of V8 Protease From Staphylococcus Aureus, PDB code: 1wcz was solved by K.Yamada, M.Ohta, T.Hasegawa, K.Torii, M.Murakami, K.Kouyama, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 100.00 / 2.00
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 61.290, 61.290, 221.130, 90.00, 90.00, 120.00
R / Rfree (%) 20.5 / 22.1

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of An Alkaline Form of V8 Protease From Staphylococcus Aureus (pdb code 1wcz). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of An Alkaline Form of V8 Protease From Staphylococcus Aureus, PDB code: 1wcz:

Zinc binding site 1 out of 1 in 1wcz

Go back to Zinc Binding Sites List in 1wcz
Zinc binding site 1 out of 1 in the Crystal Structure of An Alkaline Form of V8 Protease From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of An Alkaline Form of V8 Protease From Staphylococcus Aureus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn300

b:18.9
occ:1.00
OD2 A:ASP7 2.0 14.8 1.0
NE2 A:HIS9 2.1 19.7 1.0
NZ A:LYS147 2.1 18.8 1.0
OD1 A:ASP7 2.6 14.3 1.0
CG A:ASP7 2.6 14.0 1.0
CE1 A:HIS9 3.0 20.9 1.0
CE A:LYS147 3.0 19.6 1.0
CD2 A:HIS9 3.1 19.6 1.0
CD A:LYS147 3.2 18.3 1.0
O A:HOH572 4.0 34.4 1.0
CB A:ASP7 4.1 13.3 1.0
ND1 A:HIS9 4.1 19.2 1.0
CG A:HIS9 4.2 18.6 1.0
O A:HOH537 4.4 37.1 1.0
CG A:LYS147 4.6 17.9 1.0
C A:ASP7 4.7 14.4 1.0
CA A:ASP7 4.7 13.9 1.0
O A:ASP7 4.8 13.0 1.0

Reference:

K.Yamada, M.Ohta, T.Hasegawa, K.Torii, M.Murakami, K.Kouyama. Crystal Structure of An Alkaline Form of V8 Protease From Staphylococcus Aureus To Be Published.
Page generated: Wed Dec 16 03:08:43 2020

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