Zinc in PDB 1vyx: Solution Structure of the Kshv K3 N-Terminal Domain

The binding sites of Zinc atom in the Solution Structure of the Kshv K3 N-Terminal Domain (pdb code 1vyx). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of the Kshv K3 N-Terminal Domain, PDB code: 1vyx:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Solution Structure of the Kshv K3 N-Terminal Domain


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the Kshv K3 N-Terminal Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1061 b:0.0 occ:1.00 ND1 A:HIS34 2.2 0.0 1.0 SG A:CYS37 2.3 0.0 1.0 HB2 A:HIS34 2.3 0.0 1.0 SG A:CYS12 2.3 0.0 1.0 SG A:CYS9 2.4 0.0 1.0 HG A:CYS37 2.7 0.0 1.0 HB3 A:CYS9 2.8 0.0 1.0 CB A:CYS9 2.9 0.0 1.0 CG A:HIS34 3.0 0.0 1.0 HB2 A:CYS9 3.0 0.0 1.0 CB A:HIS34 3.1 0.0 1.0 H A:CYS12 3.1 0.0 1.0 H A:HIS34 3.2 0.0 1.0 CE1 A:HIS34 3.4 0.0 1.0 HB3 A:CYS12 3.4 0.0 1.0 CB A:CYS12 3.5 0.0 1.0 HB A:ILE11 3.6 0.0 1.0 HE1 A:HIS34 3.7 0.0 1.0 HB3 A:HIS34 3.7 0.0 1.0 HB3 A:GLU14 3.8 0.0 1.0 CB A:CYS37 3.8 0.0 1.0 N A:HIS34 3.9 0.0 1.0 N A:CYS12 4.0 0.0 1.0 HB3 A:CYS37 4.0 0.0 1.0 CA A:HIS34 4.1 0.0 1.0 H A:CYS37 4.1 0.0 1.0 CD2 A:HIS34 4.2 0.0 1.0 HB2 A:CYS37 4.3 0.0 1.0 HB2 A:CYS12 4.3 0.0 1.0 CA A:CYS12 4.4 0.0 1.0 CA A:CYS9 4.4 0.0 1.0 NE2 A:HIS34 4.4 0.0 1.0 HG22 A:VAL33 4.5 0.0 1.0 H A:GLU14 4.6 0.0 1.0 HD13 A:ILE11 4.6 0.0 1.0 H A:ILE11 4.6 0.0 1.0 O A:HIS34 4.6 0.0 1.0 HG21 A:VAL33 4.7 0.0 1.0 CB A:ILE11 4.7 0.0 1.0 H A:ASN13 4.8 0.0 1.0 CB A:GLU14 4.9 0.0 1.0 C A:HIS34 4.9 0.0 1.0 HA A:CYS9 4.9 0.0 1.0 O A:CYS9 4.9 0.0 1.0 N A:CYS37 4.9 0.0 1.0 C A:CYS9 4.9 0.0 1.0 HA A:VAL33 4.9 0.0 1.0 H A:CYS9 4.9 0.0 1.0 H A:LEU38 4.9 0.0 1.0 HA A:HIS34 5.0 0.0 1.0 C A:CYS12 5.0 0.0 1.0 CA A:CYS37 5.0 0.0 1.0

Zinc binding site 2 out of 2 in the Solution Structure of the Kshv K3 N-Terminal Domain


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the Kshv K3 N-Terminal Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1062 b:0.0 occ:1.00 HG A:CYS50 2.0 0.0 1.0 HG A:CYS53 2.0 0.0 1.0 SG A:CYS24 2.2 0.0 1.0 SG A:CYS26 2.3 0.0 1.0 SG A:CYS50 2.3 0.0 1.0 SG A:CYS53 2.3 0.0 1.0 HB A:ILE52 2.7 0.0 1.0 H A:CYS53 3.0 0.0 1.0 HB3 A:CYS50 3.1 0.0 1.0 CB A:CYS50 3.2 0.0 1.0 HG A:LEU30 3.2 0.0 1.0 HB3 A:CYS53 3.3 0.0 1.0 HB2 A:CYS26 3.3 0.0 1.0 CB A:CYS26 3.4 0.0 1.0 CB A:CYS53 3.5 0.0 1.0 HB2 A:CYS50 3.5 0.0 1.0 HB2 A:CYS24 3.5 0.0 1.0 CB A:CYS24 3.6 0.0 1.0 N A:CYS53 3.6 0.0 1.0 H A:CYS26 3.7 0.0 1.0 H A:GLY25 3.8 0.0 1.0 CB A:ILE52 3.8 0.0 1.0 HD11 A:ILE52 3.8 0.0 1.0 HD13 A:LEU30 3.9 0.0 1.0 HA A:CYS26 3.9 0.0 1.0 N A:CYS26 3.9 0.0 1.0 H A:ILE52 4.0 0.0 1.0 HB3 A:LEU30 4.0 0.0 1.0 CA A:CYS26 4.0 0.0 1.0 CG A:LEU30 4.1 0.0 1.0 HB A:VAL55 4.2 0.0 1.0 HB3 A:CYS24 4.2 0.0 1.0 CA A:CYS53 4.2 0.0 1.0 HG23 A:ILE52 4.3 0.0 1.0 HG22 A:VAL55 4.3 0.0 1.0 HB3 A:CYS26 4.3 0.0 1.0 HB2 A:CYS53 4.3 0.0 1.0 N A:GLY25 4.4 0.0 1.0 H A:GLY54 4.4 0.0 1.0 HD13 A:ILE52 4.4 0.0 1.0 C A:ILE52 4.4 0.0 1.0 CD1 A:LEU30 4.4 0.0 1.0 HG22 A:ILE52 4.4 0.0 1.0 CG2 A:ILE52 4.4 0.0 1.0 CD1 A:ILE52 4.4 0.0 1.0 H A:VAL55 4.5 0.0 1.0 CA A:ILE52 4.5 0.0 1.0 HD12 A:LEU30 4.6 0.0 1.0 CB A:LEU30 4.6 0.0 1.0 CA A:CYS50 4.6 0.0 1.0 N A:ILE52 4.6 0.0 1.0 CA A:CYS24 4.6 0.0 1.0 CG1 A:ILE52 4.6 0.0 1.0 C A:GLY25 4.7 0.0 1.0 HA A:CYS24 4.7 0.0 1.0 HG13 A:ILE52 4.8 0.0 1.0 HG21 A:VAL55 4.8 0.0 1.0 C A:CYS24 4.9 0.0 1.0 CG2 A:VAL55 4.9 0.0 1.0 C A:CYS50 4.9 0.0 1.0 HB2 A:LEU30 4.9 0.0 1.0

R.B.Dodd, M.D.Allen, S.E.Brown, C.M.Sanderson, L.M.Duncan, P.J.Lehner, M.Bycroft, R.J.Read. Solution Structure of the Kaposi'S Sarcoma-Associated Herpesvirus K3 N-Terminal Domain Reveals A Novel E2-Binding C4HC3-Type Ring Domain J.Biol.Chem. V. 279 53840 2004.
ISSN: ISSN 0021-9258
PubMed: 15465811
DOI: 10.1074/JBC.M409662200